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Detailed information on CNT30575988


BLAST search results

BLAST vs Swiss-Prot:
sp|P0CD59|NU2C2_MAIZE, E-value = 1e-54

BLAST vs NONCODE:
NONORUT004354, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690671Oryza barthiiOryza sativa20.5415.7797.94291forward
CNT3021542Oryza barthiiCitrullus lanatus20.4748.6694.83290forward
CNT30438827Oryza barthiiAegilops tauschii12.0751.0499.42171forward
CNT3059312Oryza barthiiArabidopsis lyrata20.3252.5594.1288forward
CNT30623007Oryza barthiiDaucus carota11.0133.4891.03156forward
CNT30687125Oryza barthiiTriticum urartu9.7423.7599.28138forward
CNT30597026Oryza barthiiOryza meridionalis4.8721.4398.5569forward
CNT30153781Oryza barthiiPrunus persica20.4725.9993.79290forward
CNT30101498Oryza barthiiOryza rufipogon35.5769.4299.21504forward

Expression of CNT30575988

Peptides detected in this lncRNA

>peptide 1 (33 aa)
ELLFTDYILDHCDLFLSLGRHFFPLSGLALARP*

>peptide 2 (76 aa)
MGAPVVVNAEELAGAPVGAPVGADYRGGGGDRRRGKGGGSTGVWGISGRSRRRLLPFLYIQCTLRIEEYIKLNIIK*

>peptide 3 (58 aa)
MQRSSRGRQWERRSVQTTEAVGVTADEARAEGALVSGASVGGVGGDCCHFCTFNVLYG*

>peptide 4 (36 aa)
MKLNTDGXLNLQDGVAGAGIVARSFVVGDSLLVLRL*

Sequence

>CNT30575988
CTGAGTTATTGTTCACTGACTATATCTTAGACCATTGCGATCTCTTTCTTTCACTTGGTAGGCATTTCTTCCCGTTATCGGGACTTGCACTTGCCCGGCC
TTAGTGGTATTTTAATGATTTTCTTCCCCAGCAAATCAAGTAAATAGAAGTAATAATTCAAGTCCCTCCGCAAAGGTAGAAGATCTTGATTCTCTGCAAT
TCGGCTTCAACCCGATGGAGCTCTCTTCAAAACATATCTTTCGGCGTTAGTCTTTCTGTTTGTTTGGAGGTTGTAAAGAAGATAAGTTGACTCAGGCTAT
TTCTTCAGCTTAGAACTATAAACTTTGAGGTACCCAGTTTTGAACTACCGCAGACTTGTTTCATAGCTTTCAACTGAGCGGCAGACCCGACGCGACTGAC
GGATAAGCCAACGTTAATAGCAGGTCTAATTCCGCGATAAAAGAGCTCTGTTTCCAAACAGATTTGTCCATCTGTAATGGAGATCACATTGGTGGGGATA
TAGGTCGCCTCGGGGAATACCACCAGTAGAGTCTGCAAAAGGTGTCGTTCAGGCCATCGGCTGTGGTTCAGAAGTGGGCTCAACCTGCTTTGGGATGGAT
GAAACTGAACACTGATGGAGNACTGAACTTGCAGGATGGAGTTGCGGGTGCAGGAATTGTTGCACGTTCGTTTGTCGTTGGGGATTCATTGCTCGTTCTG
CGGTTATAAGTAACGTAGCCAGCCAAATTTCTAGGACCTATATCATTACCAACTCCAGACATCACAGTTTTTCCAAAAATATGGACCTGAAGACTGGCTT
CTCCGACCTTCCACCCGATCCCTTATCGCCACTAGAAATTTGAAAATTTTGAACCGTGCCACTCCATCACGTTTTCCGTCACCCTCCTGGACGTGGGATC
CACATGTCAGTTCTATCTTCCTCCATTATTCCTCTTCTTTCTTCCCCATCTCTTCCTTCATCCCCGCGATGGGAGCACCGGTGGTGGTGAATGCAGAGGA
GCTCGCGGGGGCGCCAGTGGGAGCGCCGGTCGGTGCAGACTACAGAGGCGGTGGGGGTGACCGCAGACGAGGCAAGGGCGGAGGGAGCACTGGTGTCTGG
GGCATCAGTGGGCGGAGTCGGAGGAGACTGCTGCCATTTCTGTACATTCAATGTACTCTACGGATAGAGGAATACATAAAGTTGAACATAATAAAATAAG
AAATTGAAAGATTTCGTTGAAATTGTTCGTTTGGAAATTTCCCGAAAAGCTAATTATAGGTTCTTCTCTCCATCGGAACAATAGGGCCGTTATGCTTATT
ACTAAACTTGTTGAAGAGATGAAATAGAACCAAGGTCTATCTTTTTGATCAGAGGTTAAATCGATCATCAGAATTAGGCCAAAAATTAGGATACATTCTG
GGAAAATGAAACTTCCC