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Detailed information on CNT30575986


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONGMAT000778, E-value = 4e-43

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30674978Oryza barthiiSetaria viridis24.4738.8486.85289forward
CNT30640184Oryza barthiiNymphaea colorata26.3341.0882.96311forward
CNT30532226Oryza barthiiEucalyptus grandis28.8747.1687.39341forward
CNT30547527Oryza barthiiIpomoea triloba22.7862.1282.9269forward
CNT30371838Oryza barthiiArabidopsis thaliana34.1230.5581.89403forward
CNT30276060Oryza barthiiChenopodium quinoa29.7255.3683.76351forward
CNT3019597Oryza barthiiCitrullus lanatus16.1725.5382.72191forward
CNT30379936Oryza barthiiManihot esculenta18.3764.9788.02217forward
CNT3045373Oryza barthiiPrunus dulcis30.3145.6682.96358forward
CNT30191304Oryza barthiiSecale cereale36.2432.991.59428forward
CNT30300473Oryza barthiiTriticum aestivum36.4944.5291.18431forward
CNT30224354Oryza barthiiHordeum vulgare35.7381.3191422forward
CNT30395070Oryza barthiiTriticum turgidum34.2152.8191.34404forward
CNT30561656Oryza barthiiActinidia chinensis36.8331.0783.22435forward
CNT30510505Oryza barthiiSolanum lycopersicum36.2439.4185.98428forward
CNT30143750Oryza barthiiMedicago truncatula22.6134.8685.02267forward
CNT30441158Oryza barthiiAegilops tauschii36.4956.7991.18431forward
CNT30309793Oryza barthiiCamelina sativa32.3549.182.72382forward
CNT3059659Oryza barthiiArabidopsis lyrata18.5450.4682.65219forward
CNT30210789Oryza barthiiHelianthus annuus7.2823.7684.8886forward
CNT30683923Oryza barthiiTriticum urartu34.2144.1591.09404forward
CNT30345702Oryza barthiiEragrostis tef27.8640.7289.97329forward
CNT30596122Oryza barthiiOryza meridionalis29.5550.4399.71349forward
CNT30359537Oryza barthiiLactuca sativa26.2547.0480.65310forward
CNT30370118Oryza barthiiOryza glumipatula52.2499.8499.68617forward
CNT30705326Oryza barthiiPrunus avium26.9324.7583.96318forward
CNT3024028Oryza barthiiPopulus trichocarpa18.229.0986.51215forward
CNT30604019Oryza barthiiOryza punctata26.0891.1298.7308forward

Expression of CNT30575986

Peptides detected in this lncRNA

>peptide 1 (82 aa)
MASLLVQNTIDTTKGILRCLDLHQVDWLQQPWLRSELRSIDDPPRCRNDLATTPVNSISVENHITYLEADAAHVLLSQCTFF*

>peptide 2 (66 aa)
MSTTMLGPVVSGPKHQIFLASFHVKTVVLVRGFAHNCAAGLLKNSLTEGDNRRGNNNLSTTHEVFL*

>peptide 3 (30 aa)
MPRMFSSANAPSFDAHWNPATTESLISLRY*

>peptide 4 (35 aa)
VKTINRYIIKVPYLLHTTRHSKIYSSTAQHYQHRY*

>peptide 5 (36 aa)
MICSPDSSMVQRTIGSDFARRFKPSTSLGRSDATLH*

>peptide 6 (62 aa)
MRDQKGFFLELVLEIRERGHLLLETLPLADVQHQLVRLRAHLQRIRSHHVPVIKDTLREGKP*

Sequence

>CNT30575986
GTAAAAACTATCAACAGATACATTATCAAAGTTCCATATCTGTTGCATACCACCCGACACAGCAAAATATATAGTTCCACAGCACAACACTACCAACACC
GATACTAGATGTGTAACAAACACATCATATTTCTGACTTGTCTTGTAACTCTTTAACAATAGTAGAAGAGCTATTAGAACAGGTAAATTAATGGCAAAAA
CATATGCGAGACCAAAAGGGTTTTTTCTTAGAGCTTGTCCTCGAAATCCGAGAGAGGGGTCATCTGCTCCTTGAGACCCTTCCTCTTGCGGATGTCCAGC
ACCAGCTGGTTCGCCTGCGAGCTCACCTCCAGAGGATCAGAAGTCATCATGTCCCAGTGATCAAAGACACACTGAGGGAAGGTAAGCCTTGATGTTGTAC
AGCGGGGTACCAGGCCTCTGCATCTCCTCGAACACATGGCCTCTCTTCTGGTTCAGAACACCATAGATACCACCAAGGGCATTCTCAGGTGCCTGGATCT
CCACCAGGTAGACTGGCTCCAGCAGCCTTGGCTTCGCAGTGAGCTGAGAAGCATAGATGACCCTCCTCGCTGTCGGAATGACCTGGCCACCACCCCTGTG
AATAGCATCAGCGTGGAGAACCACATCACATACCTCGAAGCAGATGCCGCGCATGTTCTCCTCAGCCAATGCACCTTCTTTTGATGCCCACTGGAACCCA
GCCACAACAGAGTCCTTGATTTCATTAAGATACTGAACTCCCTTACACATGTCGACCACCATGTTGGGGCCAGTGGTCTCAGGTCCAAAGCACCAAATCT
TCTTGGCGAGCTTCCATGTAAAGACGGTTGTGCTTGTTCGGGGATTTGCTCATAACTGTGCGGCAGGACTTCTCAAGAACAGTCTCACGGAAGGAGACAA
CAGGAGGGGAAACAATAATCTCAGCACCACCCATGAAGTCTTCCTGTAGATCCTTCAAGCAGATTTCAAGGTGAAGCTCTCCAGCTCCAGCAATGATATG
CTCACCGGACTCCTCAATGGTACAGAGGACCATAGGATCAGACTTTGCCAGACGCTTTAAACCTTCAACAAGCTTGGGAAGATCAGATGCAACCTTGCAC
TGAACAGCAACACGCACAACTGGGGACACTGAGAACTTCATTGCTCTGATTGGGCAGGCATCAGCTTCCTTCTCATTTGTT