Detailed information on CNT30575905


BLAST search results

BLAST vs Swiss-Prot:
sp|Q39176|ERLI1_ARATH, E-value = 6e-18

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691960Oryza barthiiOryza sativa54.74100.8997.07341forward
CNT30678378Oryza barthiiSetaria viridis15.2522.5787.3795forward
CNT30187285Oryza barthiiSecale cereale14.9325.1488.1793forward
CNT30553103Oryza barthiiOryza glaberrima86.0480.48100536forward
CNT30369755Oryza barthiiOryza glumipatula81.3883.1199.61507forward
CNT30101051Oryza barthiiOryza rufipogon86.0481.7197.76536forward

Expression of CNT30575905

Peptides detected in this lncRNA

>peptide 1 (79 aa)
MGRLRLMPRMLARRAVQRLQHGCRGGVPSCTFISPFSTFAHTPSFSVSIGHLPPPPPPPLPPPPPPPLPPPPEPPPPLPP

>peptide 2 (39 aa)
AVRTDAYTMRSIEYKLINQLCRYTYTSRRMKHALITSWN*

Sequence

>CNT30575905
TGCAGTACGTACTGATGCATATACGATGAGATCCATCGAGTACAAATTAATTAATCAATTATGCAGATACACATATACAAGTAGACGAATGAAGCATGCT
TTAATTACGTCGTGGAACTGAATCATATGCATGCATATATATCTCATTAATTTACGGGATGAAGGAGGAAATTAAGGCACGCAGATACATATGATGATTT
GAACAAGGAACAAATTAGACATAGATAGATATATAGTTGTACGTGGCCTGGTGGTCGTTCTTCGTACGTTCTTGTGTGTAGCAAGCAGTGAAGTAGAATG
GAGCAGCAGCTATATTAGTTGCTGCACTGGAAGCCGGAGGGGACGGAGCGGCCGCAGTAGTTGACGAGGAGGCTGAGGTTGATGGGGAGGTTGAGGTTGA
TGCCAAGGATGTTGGCGCGGAGGGCGGTGCAGAGGCTGCAACACGGCTGCCGCGGCGGCGTCCCCAGCTGCACGTTTATCAGCCCATTCAGCACGTTCGC
GCACACCCCCAGCTTCAGCGTGTCGATCGGGCATCTTCCTCCTCCCCCGCCGCCGCCGCTTCCTCCTCCTCCGCCGCCTCCGCTTCCTCCACCGCCTGAA
CCTCCGCCGCCGCTTCCTCCTCC