Detailed information on CNT30575883


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT000386, E-value = 2e-55

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224095Oryza barthiiHordeum vulgare4.7934.0188.184forward
CNT30342600Oryza barthiiEragrostis tef9.3546.0784.15164forward
CNT30595873Oryza barthiiOryza meridionalis16.0262.4498.93281forward
CNT30369796Oryza barthiiOryza glumipatula9.4135.64100165forward
CNT30105423Oryza barthiiOryza longistaminata20.8765.9592.35366forward
CNT30102175Oryza barthiiOryza rufipogon9.0129.4886.71158forward
CNT30579095Oryza barthiiEchinochloa crusgalli11.7431.483.98206forward
CNT30558870Oryza barthiiPanicum hallii7.0723.7585.48124forward

Expression of CNT30575883

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MSSGCGWAAAGSARPRKPERRGTETETDGGSCSCLTW*

>peptide 2 (39 aa)
MTVSLGDDETEASFLPLVQDVHLPGLLVSEGVEVVVHIH*

>peptide 3 (42 aa)
MVMVMGRRRREGHCCGGGGSHYSPPLIAREEEQCSALAVSLR*

>peptide 4 (44 aa)
MVMNLEYYLIYVNMSNARKPYNMKRRKYQETKEIPGKQTSGSSR*

>peptide 5 (32 aa)
MDAQNERRIISPTTTTDELLMSSSRQASKRAE*

>peptide 6 (32 aa)
MEVVISNRSILLFRCNGYTVSFVVIFNLSSIK*

>peptide 7 (44 aa)
MCSFTFSFSCTATPRTYAFHSIPFPSLFFHTTLYRSSQHITTLS*

>peptide 8 (72 aa)
MMAHVHLLHKLAVLRHCSPRLLLDVLLHLLIQLHRHATHVRFSFHSIPIFIFPHNALPLLPTHYYFIMTLLL*

Sequence

>CNT30575883
GGGCAAGCATAGAAATAATTAGCAAATGAGGATGGTGATGCAGGAGGTGTAGAGGCTAGGCAGCAAGGGAGGGGTGGTGGTGGTCAGAGTTGGGGATGGT
CTCCTTGTGGAGATGACCGTCTCCCTTGGGGACGATGAGACCGAAGCCTCCTTCCTTCCTCTTGTACAGGACGTTCATCTCCCCGGTCTTCTCGTCTCTG
AAGGCGTAGAAGTTGTGGTCCACATTCACTAGCTGCTCCATCGCCTCCTCCACCGACAGCGGCGGCATCTCGAACACCTTGACTGCAGACCTTGGTGAGC
ACCGTGTCCTCGTCCTCGGCGCCGACGGCCTCCTCCAGATCCTTGAGCTGGGCCTGGGCGTCGTCGTCGTTGTTGTCGAGCGATGATGGCGCACGTCCAC
CTCCTTCACAAGCTGGCTGTGCTTCGCCACTGCTCTCCCCGCCTTCTCCTCGATGTGCTCCTTCACCTTCTCATTCAGCTGCACCGCCACGCCACGCACG
TACGCTTTTCATTCCATTCCATTCCCATCTTTATTTTTCCACACAACGCTCTACCGCTCCTCCCAACACATTACTACTTTATCATGACTCTGCTACTGTA
GCTATCCCATATACTCCCTCCGTATCTGTATTTTAATGTATGACACTATTGACTTTTTGAGTAACGTTTGACCATTCGTTTTATTTTTTATTTTTTTTTA
CAAATATAAAAATGTTTATGTCATGCTTAAAAAATATTTGATGACGAATCAAGTCATAATAAAATAAATAATAATTACATAAATTTTTTTAATAAGACGA
ATGGTCAAACGTTGGACGAACGGCGTCATACATTAAAATATGGAGGTAGTAATAAGTAATAGGTCCATATTACTATTCCGTTGCAACGGGTATACAGTTA
GTTTTGTAGTAATTTTTAATCTCTCTAGTATAAAATAGAATTCTAGTGAAGCAAATTACTACTAATATAACCAATAAAGAAGAATGTAGTTTCGTTGAAT
TCTACTAGTATTTCATAAAGGTCCAATTAATAAAACAAATACTCTAGTTCCATTACCGAATTATATATACTCCCTCTGTTTCAGTTTCAGGTTATAAGAC
TTTCTGGCATTACCTGTAATCATATATATGGTAATGAATCTAGAATATTATCTCATATATGTGAATATGAGTAATGCTAGAAAACCTTATAATATGAAAC
GAAGAAAATACCAGGAAACGAAGGAAATACCAGGGAAGCAAACTAGTGGTAGCAGTAGGTGAGGAGGAGAACCTTGACGTTGCGGCCCTGCATAATGAGC
AGCGGCTGTGGGTGGGCAGCAGCAGGCAGTGCGCGGCCAAGGAAACCGGAGCGGAGGGGCACGGAGACGGAGACAGACGGAGGGAGCTGCAGCTGCTTGA
CATGGTGATGGTGATGGGAAGGAGGCGGCGCGAGGGCCATTGCTGCGGTGGTGGCGGGAGCCATTATTCCCCACCACTAATAGCTAGAGAAGAAGAACAA
TGCTCTGCTCTCGCAGTCTCGCTTCGCTAGCTACCTACTGACTGGAGTGGAGTGCTCTACTGCTGTTTGCTTGCTCTTAATAACAAGAGAAGAGAGAAGC
TTGAGATGGCTGGCTGGCTGGATCTGGAACGAATTCTGGATGGATGCACAAAACGAACGACGAATTATCTCCCCTACCACTACTACTGATGAACTACTGA
TGAGCAGCAGCAGACAAGCGTCTAAAAGGGCGGAGTAATGTGGCGATGTGGATT