Detailed information on CNT30575871


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003925, E-value = 8e-150

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691875Oryza barthiiOryza sativa84.552.44100398forward
CNT30553102Oryza barthiiOryza glaberrima84.9391.12100400forward
CNT3067165Oryza barthiiLeersia perrieri78.98101.9284.95372forward
CNT30595975Oryza barthiiOryza meridionalis78.7794.8898.11371forward
CNT30100753Oryza barthiiOryza rufipogon91.9394.96100433forward

Expression of CNT30575871

Peptides detected in this lncRNA

>peptide 1 (36 aa)
MKTGIHYDTLSDVRLQVSEALTRCICALHDLISFLV*

Sequence

>CNT30575871
TATAATATGACGGCAGGAAATATCAAGTGCGGTAGGTGCAATCACGAGTGAATTTAAGCTGCAGCAATTGCAATCACAATCACAAATTCTGACAGTACCT
AAAAAATGCAACAATTGTATATTGACAGAAGGAATGGGCTGGCATATTTACACTGTTCCATACAATAACCATTTGCAGGCTAGCTTAGCCAGGAGCAAGC
ACAAGAATGAATGGGCATAGCTGCGATTTCTCCCTAGAGAAACTAAATTGCAGGTTAGCCAGGAGCTAACACATGCATATGCCATGAAAACTGGAATACA
CTACGATACTTTGTCGGACGTGCGCTTGCAGGTTAGCGAGGCGCTAACGCGGTGCATATGTGCACTTCACGACCTTATTTCTTTTCTCGTTTAAATTTGG
GGGAGGTGAGGTCAATTAGGTGTTGACCTGGATTTCCCCCAGAGAGTATGGACAGTCTGATGGGTTCTTCA