Detailed information on CNT30575833


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENH7|ATPA_ORYNI, E-value = 1e-46

BLAST vs NONCODE:
NONORUT007280, E-value = 3e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30696665Oryza barthiiOryza sativa22.392.6599.33150forward
CNT30703171Oryza barthiiQuercus lobata27.611.5582.16185forward
CNT30291343Oryza barthiiTriticum aestivum69.8531.1292.09468forward
CNT30225628Oryza barthiiHordeum vulgare21.6472.1495.86145forward
CNT30553137Oryza barthiiOryza glaberrima35.82100100240reverse complement
CNT30250642Oryza barthiiAvena sativa24.4812.392.07164forward
CNT3018020Oryza barthiiZea mays7011.3991.04469forward
CNT30680889Oryza barthiiTriticum urartu51.6448.1291.33346reverse complement
CNT30340274Oryza barthiiEragrostis tef43.8810091.5294reverse complement
CNT30121210Oryza barthiiCitrus clementina305.1682.09201forward
CNT30148014Oryza barthiiBrachypodium distachyon39.493.6293.56264forward
CNT30604314Oryza barthiiOryza punctata18.3645.5699.19123forward

Expression of CNT30575833

Peptides detected in this lncRNA

>peptide 1 (31 aa)
MIYASYICICICFSFLKEFWSNNFFSWSDKK*

Sequence

>CNT30575833
GGATAGAACAGTTTGGTAGCTGACAAGGCTCATAACCGTGGGGTTGCAGGTTCGATTCCCACTACCCGCTCCATATTCCTTCTTTATGATATATGCATCA
TACATTTGTATATGCATTTGTTTTTCTTTCCTAAAAGAGTTTTGGTCTAACAATTTTTTCTCTTGGTCCGATAAAAAATGAAAAGAAAGAAGAAAATATG
AAAAAAGCGTCCATTGTCTAATGGATAGGACAGAGGTCTTCTAAACCTTTGGTATAGGTTCAAATCCTATTGGACGCAATCTTATTTCTATCTATTCTTT
AAATAACTATACTAAAAACTAAGAAAACTTTTTTGCATGATTCAAATGAAAAATCTTTCTCAACGATTTCTCCTCTACTACTTCTACTAACAAGAGTAGA
CGTGCAAAATTTATGTTTGTTCCTGAAGGGAAAACCGTTCGAGTTGTTCCTGAATAGCTTCCTTCAAAAGGATTTCCGCTTCCTCGGTGAATGTCTTGCT
AGAAGATATAATTTCTTAGAATTGAGGTTTAGTATCTTTTAGGTGTTTACGTAACTCATCCAGAAATTTCTTTACCTGTCCAATTTCTAAGGAATCAAGA
TATCCTCTTGTTCCGATATAAATAGTAGATATCTGCTCTTCCACTGGAAGAGGATTTGCTTGGGATTGTT