Detailed information on CNT30575816


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT003945, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553114Oryza barthiiOryza glaberrima84.660.36100335forward
CNT30361099Oryza barthiiSorghum bicolor60.3528.7683.68239forward
CNT30596016Oryza barthiiOryza meridionalis7543.87100297forward
CNT30148063Oryza barthiiBrachypodium distachyon40.9130.9886.42162forward

Expression of CNT30575816

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MLSAFCMCPLLYQTNICRSLRLMLKKYSAI*

>peptide 2 (67 aa)
MSSERITTRTPKISFTRCTQHPGLLLTDEFIPICHTDTENRGSVSLCCLLSVCVLCCTKQTSVVPSV*

Sequence

>CNT30575816
TGAACATGCCCCTGAAGTGTGGCTGAAATGTAAGGCAAAGAGATAAAAATGGAATCAAGAAAGCTGTATAAAGGTTACACAAATCCTTTAGTATGATGAT
AAAGTCACTCCTATAAAACGGTTTATAAAGGTTCCATTTCTACAAAAAGAACTTCACACATGAGCTCTGAACGAATAACAACAAGGACCCCAAAAATTAG
TTTCACAAGGTGCACACAACATCCCGGTCTATTGTTGACAGATGAATTTATACCGATCTGTCATACTGATACAGAAAATAGAGGCTCTGTAAGCTTATGT
TGTCTGCTTTCTGTATGTGTCCTTTGCTGTACCAAACAAACATCTGTCGTTCCCTCCGTTTGATGCTCAAGAAATATTCAGCGATCTGACTCTTCA