Detailed information on CNT30575809


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30100712Oryza barthiiOryza rufipogon93.510099.7331forward

Expression of CNT30575809

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MAHSTLHNISAANLSFQFQYKHVQETAYP*

>peptide 2 (66 aa)
MISFFRGLHECSTVKNSWPFYGSFYTAQYISSELIISVPIQACPRNCIPIVHTSRDRHPLRISNGS*

>peptide 3 (53 aa)
MVHENLDTIDYMHINALTPELPHLLLHVHGVPPVLRLSPLLSSLIFLGAEEKQS

>peptide 4 (46 aa)
MQYCKKFMAILWLILHCTIYQQRTYHFSSNTSMSKKLHTHSSYITR*

Sequence

>CNT30575809
GAATGATCAGTTTTTTTAGAGGCCTTCATGAATGCAGTACTGTAAAAAATTCATGGCCATTTTATGGCTCATTCTACACTGCACAATATATCAGCAGCGA
ACTTATCATTTCAGTTCCAATACAAGCATGTCCAAGAAACTGCATACCCATAGTTCATACATCACGCGATAGGCATCCGCTTCGAATATCAAATGGTTCA
TGAGAATCTAGACACAATAGATTATATGCATATCAACGCCTTAACACCAGAGCTTCCCCACCTCCTCCTCCACGTTCATGGCGTCCCCCCTGTTCTTCGC
CTCTCTCCGCTTTTGAGTTCTTTGATATTTTTGGGTGCGGAGGAGAAGCAGAGC