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Detailed information on CNT30575766


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30223386Oryza barthiiHordeum vulgare23.2516.9497.11173forward
CNT30439298Oryza barthiiAegilops tauschii23.2517.9697.69173forward
CNT30683092Oryza barthiiTriticum urartu23.257.8297.69173forward
CNT30116349Oryza barthiiOryza nivara33.8710099.21252reverse complement

Expression of CNT30575766

Peptides detected in this lncRNA

>peptide 1 (38 aa)
MLSLCIAQVITRTACMTCSIDNFNNTILKISPPWILGS*

>peptide 2 (32 aa)
MSLVKSMKGRLIHLSSLLLRCLMIRITEQMSD*

>peptide 3 (36 aa)
ELDVAGEIYERKTYPFEFSTVEMPYDSYNGTNVRLR*

Sequence

>CNT30575766
GAGAATTAGATGTCGCTGGTGAAATCTATGAAAGGAAGACTTATCCATTTGAGTTCTCTACTGTTGAGATGCCTTATGATTCGTATAACGGAACAAATGT
CAGATTGAGGTAAGAAGGCCAAGATGCTTTCGTTATGCATTGCACAGGTCATAACAAGAACAGCTTGCATGACTTGTAGTATCGACAACTTTAATAACAC
TATCTTAAAGATCAGCCCCCCTTGGATTTTAGGTTCTTAACTACCGAAGCGAAGAAAAGGCTGGATCAAGAAAAGGGGGGTACTACGAGCCCTCTGCCCC
ACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGACGTCACCCTTAGATAGAGTTATTCTGTCGATACAGAGATGCGCTTGAAAAGATCAAACTG
ATTATTGATCAAAATTTAGGGTTTGAAACTTAGGTAATTAACTTCTTCTGCGTAACCCAAGAAGAAATTGGATCGATTTTTGAGAAATCGAATTCAGTTA
AGACAAGGGAAATTAAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCTCAAGTACGGTTCTAGGGGAAGGAACTACCTATTCCGAAAAGTCGTGT
GGAATGCTTGCAGGTACATCCTAAAAGTTAGGATTGGCAGACCATATGCTACTATTGTTGTGGAATATCGAGATTTCTGTGTAAGTCTGTAACTCCTACA
ATTTCATTTGGCGGACCATATGCTACTTCTAAAAGTCATGCTTC