Detailed information on CNT30575755


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONOSAT001126, E-value = 2e-78

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695974Oryza barthiiOryza sativa103.9147.4291.35266forward
CNT30553947Oryza barthiiOryza glaberrima23.447.6193.3360forward
CNT30597242Oryza barthiiOryza meridionalis87.545.990.62224forward
CNT30109911Oryza barthiiOryza longistaminata103.9143.1190.98266forward
CNT30102949Oryza barthiiOryza rufipogon103.9126.6392.11266forward
CNT30117497Oryza barthiiOryza nivara103.9125.7592.11266forward

Expression of CNT30575755

Peptides detected in this lncRNA

>peptide 1 (61 aa)
AFARRPASTVRDELSHFVMSFINTCRSRIPKESTRGGPRWEILFFFPNSGRRRHSFLSPSL*

Sequence

>CNT30575755
CGCCTTTGCTCGTCGCCCGGCTTCCACAGTTCGTGACGAGCTGAGCCACTTCGTCATGAGCTTCATCAACACCTGTAGATCAAGAATTCCGAAGGAATCG
ACGCGAGGTGGACCACGGTGGGAGATCCTCTTCTTCTTCCCCAACTCCGGCCGCCGACGCCATTCCTTTCTTTCCCCTTCTCTGTAGAAGCCTGGGGGAC
GATGACCGTAGCAGCCGCGCCGTCGCCGAACCAGTACACCGTCGCCAAGACTTCGC