Detailed information on CNT30575744


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30504983Oryza barthiiNicotiana attenuata24.4619.1797.42349forward
CNT3037914Oryza barthiiCucumis melo29.0119.4588.41414forward

Expression of CNT30575744

Peptides detected in this lncRNA

>peptide 1 (40 aa)
MTRLEEEAPANSVPAAAVRQGGQVFFGMTSRKGHVGGESG*

>peptide 2 (72 aa)
MKLKSLVIADQHAAVNMYPGPVHTACHTLGIGFARIIGPMITHDFCVPLVPQRPLVVLLAHTKVGSSTGVKS*

>peptide 3 (62 aa)
MLSKPIHLSEIEESGISCVGVKSVDLRRNAKSEGSSLGPYRRWGAKAWGANRIRYPGSPCHK*

>peptide 4 (47 aa)
MTSSPHGPYGLGHTRATMAMTMGSKAVRRSESGKIASVRIVLCNSGT*

>peptide 5 (42 aa)
MMLSWSFRMISHTGTETRPRLPRGAAVGNLGQWAKARSSNIA*

Sequence

>CNT30575744
GCGTGGGAATCTGCTGAACAGTTTGGGCCAAATCCTGAAGAAAGCTCAAAAGCGTTGTTTGATGAGCCTGCGTAGTATTAGGTAGTTGGTCGGGTAAAGG
CTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGGATGATCAGCCACACTGGGACTGAGACACGGCCCAGACTCCCACGGGGGGCAGCAGTGGGGAATC
TTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAATGCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAAGA
CTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACAGGGGGGGCAAGTGTTCTTCGGAATGACTAGTCGTAAAGGGCACGTAGGCG
GTGAATCGGGTTGAAATGAAAGTCGCCAAAAAGTGGCGGAATGCTCTCGAAACCAATTCACTTGAGTGAGATAGAGGAGAGTGGAATTTCGTGTGTAGGG
GTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCATGGGGAGCGAACAGGATTA
GATACCCTGGTAGTCCATGCCATAAATGATGAGTGTTCGCCCTTGGTCTACGCAGATCAGGGGCCCAGCTAACGCGTGAAACACTCCGCCTGGGGAGTAC
GGTCGCAAGACCAAAACTCAAAGGAATTGATGGGGCCTGCACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACTTGCAAAACCTTACCAGCCCTTGA
CATATGAACAACAAAACCTGTCTTTAATGGGATGGTACTGACTTTCATACAGGTGCTGCATTGCTGTCGTCAGCTCGTGTCGTGAGATGTTTAGTCAAGT
CCTATAACGAGCGAAACCCTCATTTTGTGTTGCTGAGACATGCGGCTAAGGAGAAATTGTGGTACGTAGTGGTAATAGTACGCGCCCCGCTCCAAAACAA
AGAAAAAGGTGCGTGCCGCACTCACGAGGGACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATGGGCTAGGCCAC
ACACGTGCTACAATGGCAATGACAATGGGAAGCAAGGCTGTAAGGCGGAGCGAATCCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAA
CATGAAGTTGAAATCGCTAGTAATCGCGGATCAGCATGCTGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCTGTCACACCCTGGGAATTGGTTTC
GCCCGAATCATCGGACCAATGATCACCCATGACTTCTGTGTACCACTAGTGCCACAAAGGCCTTTGGTGGTCTTATTGGCGCATACCAAGGTGGGGTCTT
CGACTGGGGTGAAATCGTAACAAGGTA