Detailed information on CNT30575727


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9ZRR5|TBA3_HORVU, E-value = 5e-73

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30517711Oryza barthiiJuglans regia20.6717.3689.1392forward
CNT3024735Oryza barthiiPopulus trichocarpa23.1519.0787.38103forward

Expression of CNT30575727

Peptides detected in this lncRNA

>peptide 1 (96 aa)
MPHLNPVGHQSTNWMVRLVLMVATAAFTSLGTTSPRVALGHHGGWLEGAVGDLGNGELLMVGRKHEVDPWVGHKVGLELIDIHVQSTIKPQGGGQG*

>peptide 2 (97 aa)
LGVHEVELVVDAGEHLHDAGGVGDHAHGPLHLGEVAAGDDAGRLVVDAALEPRRAPVHELDGALGLDGGDGGVHVLGHDVAAGRTWPSWRMARRRCW*

>peptide 3 (45 aa)
RLEYMRSNLWSMRENTSTTLVELEIMHTALCTLARSPLGTTLGGW*

Sequence

>CNT30575727
CGCTTGGAGTACATGAGGTCGAACTTGTGGTCGATGCGGGAGAACACCTCCACGACGCTGGTGGAGTTGGAGATCATGCACACGGCCCTCTGCACCTTGG
CGAGGTCGCCGCTGGGGACGACGCTGGGCGGCTGGTAGTTGATGCCGCACTTGAACCCCGTCGGGCACCAGTCCACGAATTGGATGGTGCGCTTGGTCTT
GATGGTGGCGACGGCGGCGTTCACGTCCTTGGGCACGACGTCGCCGCGGGTCGCACTTGGCCATCATGGAGGATGGCTCGAAGGCGCTGTTGGTGATCTC
GGCAACGGAGAGTTGCTCATGGTAGGACGAAAGCATGAAGTGGATCCTTGGGTAGGGCACAAGGTTGGTCTGGAACTCATTGACATCCACGTTCAGAGCA
CCATCAAACCTCAGGGAGGCGGTCAGGGATGAGATAACCTGCACA