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Detailed information on CNT30575685


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002239, E-value = 8e-100

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692090Oryza barthiiOryza sativa10028.4898.78327forward
CNT30102265Oryza barthiiOryza rufipogon93.8841.693.49307forward

Expression of CNT30575685

Peptides detected in this lncRNA

>peptide 1 (87 aa)
PELPSCALADAASSTKSAASRAPFAKLVEGKYSSYPPLSFPLRIGLYPEEINAESNSFSSLSLQLTLGFSGSNPLGWSPISSIQAYK*

Sequence

>CNT30575685
GCCCGAGCTGCCGTCCTGTGCTCTAGCCGACGCCGCTTCCTCCACCAAATCCGCCGCATCCCGTGCTCCGTTTGCAAAATTAGTTGAGGGTAAATATTCC
TCTTATCCTCCTCTATCTTTTCCCCTAAGAATCGGACTTTATCCCGAAGAAATCAACGCGGAATCGAATTCGTTTTCGAGTTTATCTCTCCAACTAACCC
TCGGTTTTTCCGGCTCAAATCCTCTCGGTTGGAGTCCGATCTCTTCAATCCAAGCCTATAAATAGCATCCCCTAGTCGTCCTCTTCCGTTTGCCCCAAGT
CCCGAGCTCCCCCATCGCCCGTAGAGC