Detailed information on CNT30575680


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10M12|40C1_ORYSJ, E-value = 1e-46

BLAST vs NONCODE:
NONZMAT000139, E-value = 3e-83

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692288Oryza barthiiOryza sativa97.1948.99100242forward
CNT30522081Oryza barthiiSetaria italica91.1639.2194.27227forward
CNT30392320Oryza barthiiTriticum turgidum78.719891.84196forward
CNT30439818Oryza barthiiAegilops tauschii85.9471.5790.65214forward
CNT30444735Oryza barthiiSaccharum spontaneum90.3639.495.56225forward
CNT30721558Oryza barthiiTriticum spelta88.3598.2191.36220forward
CNT30341741Oryza barthiiEragrostis tef88.3536.388.64220forward
CNT30596661Oryza barthiiOryza meridionalis89.9662.5790.18224forward
CNT30369862Oryza barthiiOryza glumipatula86.7598.18100216forward
CNT30106627Oryza barthiiOryza longistaminata81.53100100203forward
CNT30102585Oryza barthiiOryza rufipogon87.9562.2291.32219forward
CNT30116256Oryza barthiiOryza nivara90.7699.5699.56226forward

Expression of CNT30575680

Peptides detected in this lncRNA

>peptide 1 (36 aa)
GRSSSAGCRPRTTSRARRWCRRGRRRGPCRRGGRRS*

>peptide 2 (82 aa)
GDDLPALVVALAPLPERDGGAVADAAVVLVAVEGVEVEADVVQHADAAEALAHVAALRPQHRLVRVLRVERRQLHLKPPPPRR

>peptide 3 (75 aa)
GTIFQRWLSPSHHFQSATVVPSRTPPWSLSPWRASKLRRMLFSMRMQRKLLPTSPLSVHSTDSSGYSGLNGASFT*

Sequence

>CNT30575680
GGGGACGATCTTCCAGCGCTGGTTGTCGCCCTCGCACCACTTCCAGAGCGCGACGGTGGTGCCGTCGCGGACGCCGCCGTGGTCCTTGTCGCCGTGGAGG
GCGTCGAAGTTGAGGCGGATGTTGTTCAGCATGCGGATGCAGCGGAAGCTCTTGCCCACGTCGCCGCTCTCCGTCCACAGCACCGACTCGTCCGGGTACT
CCGGGTTGAACGGCGCCAGCTTCACCTGAAACCACCACCACCACGACGC