Detailed information on CNT30575679


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30554094Oryza barthiiOryza glaberrima29.7739.4894.01167forward
CNT30108884Oryza barthiiOryza longistaminata85.210098.74478forward
CNT30100946Oryza barthiiOryza rufipogon93.5862.8798.86525forward
CNT30116236Oryza barthiiOryza nivara89.8458.7499.4504forward
CNT30603650Oryza barthiiOryza punctata28.8835.9288.27162forward

Expression of CNT30575679

Peptides detected in this lncRNA

>peptide 1 (89 aa)
EKIIDPRGVEETLAHRRKLSTHRGKQRRWRGCGLRVDGATATRHSPRRRRSPLRRPYPPLATFSPIACPPIRVGEDQPPPSWDPIPLAW*

>peptide 2 (33 aa)
KKSSTQEAWKKPSRTGGNYQRIGESRGGGAGAD*

Sequence

>CNT30575679
GAAAAAATCATCGACCCAAGAGGCGTGGAAGAAACCCTCGCGCACAGGAGGAAACTATCAACGCATAGGGGAAAGCAGAGGCGGTGGCGCGGGTGCGGAT
TGAGAGTCGACGGCGCGACGGCGACGCGGCACTCTCCCCGGAGGCGGCGCTCTCCCCTCCGCCGACCGTACCCTCCGCTGGCCACTTTCTCACCGATTGC
ATGTCCACCAATTAGAGTTGGAGAAGACCAGCCTCCTCCTTCTTGGGACCCTATACCCTTGGCCTGGTAGTACCGGATTGATTTTAAGACCAATTTTCAG
TACTGGAGATGGGAACACTGGAGCTGGGTGACTGAAGCGCATGGTGGCATTAGTGCTAAGCTTAAACACTTGCATTCAATTTGTAGTTTAGCTCTTAGCT
GGCTACTTCTATTTATTCTAAGAAAAACAACTGAATTGTACCCATTTTGATTAATCTGTGACCTTTTCATGTCCTTCAAATTTCATCATCTTCTGCATTT
GTTGATCTAATACGGCCCAGCCACCTGTTTTTTTTTCATTCATAGTCTCATGATCATTGCG