Detailed information on CNT30575628


BLAST search results

BLAST vs Swiss-Prot:
sp|Q6ENG0|CYF_ORYNI, E-value = 3e-59

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30623404Oryza barthiiDaucus carota23.6325.8485.5169forward
CNT30687833Oryza barthiiTriticum urartu22.612.4393.9466reverse complement
CNT30100754Oryza barthiiOryza rufipogon93.1520.9297.06272forward

Expression of CNT30575628

Peptides detected in this lncRNA

>peptide 1 (31 aa)
CYSCYHQDRSVPFLGFPPHIWDILRNERLSS*

>peptide 2 (59 aa)
MNVFLHNRVGGKNXKDDFTIFLTGNRAYHKNIFFIGTITLKREISXLFFQLRRNTVGRR*

Sequence

>CNT30575628
TGTTACTCTTGCTATCATCAGGATAGATCTGTCCCCTTCCTCGGTTTCCCCCCACATATATGGGATATTTTAAGAAATGAACGTCTTTCTTCATAACAGG
GTCGGGGGAAAGAATGGNAAAGACGATTTCACTATATTTCTTACCGGGAACAGGGCCTATCACAAGAATATTTTTTTTATTGGGACGATAACTCTGAAAA
GAGAGATTTCCTNTCTTTTCTTTCAACTCAGGAGAAATACGGTCGGGCGGCGCTAATTCGAATCCCTCGGGCAAAAAAACTACAGTTACCGC