CANTATAdb - search

Detailed information on CNT30575558

BLAST search results

BLAST vs Swiss-Prot:
sp|Q01595|CCDP_MAIZE, E-value = 3e-31

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30226858	Oryza barthii	Hordeum vulgare	24.14	62.28	90.29	175	forward
CNT30664801	Oryza barthii	Triticum dicoccoides	10.21	23.64	89.19	74	forward
CNT30369897	Oryza barthii	Oryza glumipatula	99.45	90.46	97.23	721	forward
CNT30116352	Oryza barthii	Oryza nivara	100	86.72	98.34	725	forward

Expression of CNT30575558

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MTKHSISTCERVYIYMDIDAWCNGMVIKGSEDRLI*

>peptide 2 (82 aa)
MLRLMPRMLALMAVQRQTAASRSTRPPSNGQHCSLSGTPIFSLSRLSTLAHTLSFSASIGHLFPPPDGGDGGGVTGGVGVGQ*

Sequence

>CNT30575558
CAAATAACAAGATACAGAGATCAGGCTGATGGATCAATCATATCATATCAGTGATAGATCGATCGTTCGACACATATATATGTATGACAAAACATAGTAT
AAGTACGTGCGAAAGGGTTTATATATATATGGATATTGATGCATGGTGTAATGGTATGGTAATTAAGGGATCGGAGGATCGATTAATTTAGAGAGGGCAG
GTGAAGTCGGAGGGGCAGGAGAGAGAGATCGACGGGGATGTTGAGATTGATGCCGAGGATGTTGGCCTTGATGGCGGTGCAGAGGCAGACGGCGGCGTCG
AGGTCGACGAGGCCACCCAGCAACGGGCAGCACTGCTCGCTCTCCGGCACGCCGATCTTCAGCTTGAGCAGGTTGAGCACGTTGGCGCACACGCTCAGCT
TCAGCGCGTCGATCGGGCACTTATTCCCTCCACCCGACGGCGGCGACGGAGGCGGCGTCACCGGCGGCGTCGGTGTGGGGCAGTAGGGCTCGCATGCCTG
CACTACTGCACCCATCTGCATGGTGAAGAGCACATTGAGGGCAAGGAACAGCGCACAAACCTGCACCTTCTTGCCGGCCATCTTAATTAATTAGCTAGCT
CTACTACTGCTTAGCAATTAATTAGCTTAATTAGCAGCTACTGCCTATAGCTCAGCTCGATCGATCGATCAGAAGAAGCTGGAGCTGCTTTTTGATATTT
GCTAGCTCGATCGGCCGGGATGCAT