Detailed information on CNT30575554


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553169Oryza barthiiOryza glaberrima10053.24100296forward
CNT30110851Oryza barthiiOryza longistaminata55.7445.4595.15165forward
CNT30101533Oryza barthiiOryza rufipogon10010.2296.96296forward
CNT30116327Oryza barthiiOryza nivara10065.92100296forward
CNT30604299Oryza barthiiOryza punctata44.594.4186.36132forward

Expression of CNT30575554

Peptides detected in this lncRNA

>peptide 1 (40 aa)
ETRVGELLLALLAIIFLPAAGMMPSPPPNGRSLGTPTSPR*

>peptide 2 (97 aa)
RNQSGRAPSCSPRHHLLAGRRDDAISAAQRPISGNADLATVALERGHTVVNAQPWVRAAVPVASRRIRLSYCATSFASPFSPKRPKNLSEPCSEEGDR

Sequence

>CNT30575554
AAGAAACCAGAGTGGGAGAGCTCCTTCTTGCTCTCCTCGCCATCATCTTCTTGCCGGCCGCCGGGATGATGCCATCTCCGCCGCCCAACGGCCGATCTCT
GGGAACGCCGACCTCGCCACGGTAGCTCTGGAGCGCGGCCACACCGTCGTCAACGCGCAGCCGTGGGTTCGCGCCGCTGTTCCCGTCGCCTCGAGGCGAA
TCCGGTTGAGCTACTGCGCCACCAGCTTCGCCTCACCATTCTCTCCAAAACGCCCCAAGAATCTCTCAGAACCGTGCAGCGAGGAGGGAGATCGAC