« Back to Oryza barthii search


Detailed information on CNT30575530


BLAST search results

BLAST vs Swiss-Prot:
sp|Q76FS2|TBB8_ORYSJ, E-value = 6e-134

BLAST vs NONCODE:
NONBNAT007651, E-value = 9e-65

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692476Oryza barthiiOryza sativa35.3355.67100319forward
CNT30674634Oryza barthiiSetaria viridis35.8844.6989.2324forward
CNT30522155Oryza barthiiSetaria italica33.3334.2492.03301forward
CNT30641074Oryza barthiiNymphaea colorata37.2191.5592.86336forward
CNT30534291Oryza barthiiEucalyptus grandis17.9425.4383.95162forward
CNT30377201Oryza barthiiArabidopsis thaliana45.471.6881.46410forward
CNT30629386Oryza barthiiVigna unguiculata16.557.7588.59149forward
CNT30390564Oryza barthiiTriticum turgidum19.8258.8887.71179forward
CNT30586804Oryza barthiiMusa acuminata25.3629.6690.39229forward
CNT30511260Oryza barthiiSolanum lycopersicum17.0538.2181.82154forward
CNT30553024Oryza barthiiOryza glaberrima42.9727.1794.59388forward
CNT3015387Oryza barthiiZea mays37.8721.1485.96342forward
CNT3041960Oryza barthiiChlamydomonas reinhardtii20.2753.6788.52183forward
CNT30341625Oryza barthiiEragrostis tef53.649.6485.33484forward
CNT30361420Oryza barthiiSorghum bicolor24.1451.2994.95218forward
CNT30595966Oryza barthiiOryza meridionalis31.1245.8498.58281forward
CNT30370114Oryza barthiiOryza glumipatula52.658100475forward
CNT30119164Oryza barthiiCitrus clementina17.8334.5580.75161forward
CNT3036150Oryza barthiiCucumis melo8.0821.6684.9373forward
CNT30330123Oryza barthiiDioscorea rotundata37.8733.683.63342forward
CNT30150001Oryza barthiiBrachypodium distachyon7.3120.8990.9166forward
CNT3099978Oryza barthiiOryza rufipogon36.4340.6289.67329forward

Expression of CNT30575530

Peptides detected in this lncRNA

>peptide 1 (69 aa)
MFLASHICCVSSGTVSALYCCDPRDVSGANPTMKKCSRGNGIRSEFSCPGNRRQHVTPLIVADIRWFRSP

>peptide 2 (75 aa)
MLLSASVNSISSIPSLVYQWRKALRRNMAVNCSLTRRNISWMEVELPTKVDAMERPTGGMSQTLDLTLLGIHSTK*

>peptide 3 (48 aa)
MTTNEGMQQVVAHSTQAAAVAADTATAHWIDRSIDQASSAAAASSSSS*

Sequence

>CNT30575530
CAGATGAAGATGAACACAGTAGAATTTAGTCCCATGAAAATGAATAGATAACATTTCCTAACATATACAGAGATAGAAAAGAGTAAACCACGGTTCATGT
ACATGAATAAACAAATTTAGACAGACAAGAAACCTGAACAACGATGACAACGAACGAAGGCATGCAACAAGTAGTAGCGCACAGTACACAAGCAGCAGCA
GTAGCAGCAGACACGGCAACGGCACATTGGATCGATCGATCGATCGATCAGGCCTCGTCGGCGGCGGCGGCGTCGTCCTCCTCGTCGTAGTCGTCCTCGG
CGGTGGCGTCCTGGTACTGCTGGTACTCGGCGACGAGGTCGTTCATGTTGCTCTCGGCCTCGGTGAACTCCATCTCGTCCATTCCCTCGCTGGTGTACCA
GTGGAGGAAGGCCTTGCGGCGGAACATGGCGGTGAACTGCTCGCTGACGCGGCGGAACATCTCCTGGATGGAGGTGGAGTTGCCGACGAAGGTGGACGCC
ATGGAGAGGCCGACGGGGGGGATGTCGCAGACGCTGGACTTGACGTTGTTGGGGATCCACTCCACGAAGTAGGACGAGTTCTTGTTCTGCACGTTGATCA
TCTGCTCGTCCACCTCCTTGGTGCTCATCCTGCCCCGGAACATGGCGGACGCCGTGAGGTAGCGGCCGTGGCGCGGGTCGGCGGCGCACATCATGTTCTT
GGCGTCCCACATCTGCTGCGTCAGCTCCGGCACCGTCAGCGCCCTGTACTGCTGCGACCCGCGCGACGTCAGCGGCGCGAACCCCACCATGAAGAAGTGC
AGCCGCGGGAACGGGATCAGGTCCGAGTTCAGCTGCCCCGGGAACCGCAGGCAGCACGTCACCCCGCTCATCGTCGCCGATATCAGGTGGTTCAGGTCAC
CAA