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Detailed information on CNT30575527


BLAST search results

BLAST vs Swiss-Prot:
sp|Q10QA5|D14_ORYSJ, E-value = 5e-56

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30692446Oryza barthiiOryza sativa48.1864.82100304forward
CNT30678417Oryza barthiiSetaria viridis15.2129.0992.7196forward
CNT30522336Oryza barthiiSetaria italica19.6546.7997.58124forward
CNT30524833Oryza barthiiPhaseolus vulgaris28.6811.9681.22181forward
CNT30296550Oryza barthiiTriticum aestivum31.2247.1389.85197forward
CNT30589135Oryza barthiiMusa acuminata19.3331.7786.89122forward
CNT30553163Oryza barthiiOryza glaberrima35.9716.5199.56227forward
CNT30439764Oryza barthiiAegilops tauschii15.6921.290.9199forward
CNT30448528Oryza barthiiSaccharum spontaneum2911.7991.8183forward
CNT301613Oryza barthiiZea mays31.5434.9191.46199forward
CNT30683907Oryza barthiiTriticum urartu35.9734.5590.31227forward
CNT30361755Oryza barthiiSorghum bicolor10.6221.0797.0167forward
CNT30369879Oryza barthiiOryza glumipatula35.9731.6299.56227forward
CNT30147849Oryza barthiiBrachypodium distachyon17.4324.9492.73110forward
CNT30100699Oryza barthiiOryza rufipogon35.9720.6499.56227forward
CNT30116295Oryza barthiiOryza nivara48.1832.2799.34304forward
CNT30603857Oryza barthiiOryza punctata34.7125.1798.17219forward

Expression of CNT30575527

Peptides detected in this lncRNA

>peptide 1 (34 aa)
MSGRMLKRVRLNSCTAAGTSAPTARGAYPVAHAE*

>peptide 2 (63 aa)
MRVPLLGHTYRSRSCGGFFFFSFVLTRRCGYAHARRAAVACGGRWISTGRERGGAPGRGGWGR*

Sequence

>CNT30575527
TAATGTAATTTTTTTCCAATAGAGTAAGGTAGGTAAAAATCGAGCACTAATGCTACAGTACACTCTCGGTCTTGGCAGGTCGCGCCGAAATATTTTCTAG
GCCTGAGAAGAGGAGGGTAAAATTGCAGTAAAATCCGACGCGGTAAAAAAAAAAAACAGTAGAGGGATGCGTGTCCCCCTACTGGGCCACACGTACCGTA
GCCGCAGCTGCGGTGGTTTTTTTTTTTTCTCCTTCGTTTTGACTCGTCGCTGCGGCTACGCGCACGCGCGGCGCGCCGCGGTGGCGTGCGGGGGGCGTTG
GATTAGTACCGGGCGAGAGCGCGGCGGAGCACCTGGGCGAGGAGGCTGGGGGCGCTGAGGTGGGGGAGGTGACCCTCGGTCTGGAGGAACTCGACGGTGG
TGCGGCCGCCGAGGTCGGTCTTGAAGACGGTCTGGCAGACGTGGAGGGAGATGTCCGGGCGCATGTTGAAGAGGGTGCGGCTGAACTCCTGCACCGCCGC
CGGCACGTCGGCGCCCACCGCCAGAGGCGCGTACCCCGTCGCCCACGCCGAGTAGTTCGCCCCCATCGCGTCGAACACCTGCTGTATCTCCTCCAGCTCG
AACCCGCCGTGGTAGTCGCTGTCGTTCAAGA