Detailed information on CNT30575501


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553021Oryza barthiiOryza glaberrima47.1691.9799.9996forward
CNT30105260Oryza barthiiOryza longistaminata76.881.4396.491622forward
CNT30100701Oryza barthiiOryza rufipogon99.2488.2298.852096forward

Expression of CNT30575501

Peptides detected in this lncRNA

>peptide 1 (75 aa)
MADSAAAKQARWGVSDQASFPPTQLFSSSASAQIGGRRCQREASAGRTTFGRAASRPCSIHHHHASIYIFHLAHW*

>peptide 2 (45 aa)
MRGLGTAWKDFTRLHTCIAAHRGYISKIPSFDHLIQLLVCSIFQL*

>peptide 3 (39 aa)
MLINYLDLTVQPASERSHQPSAFLSIGFIPASDASCLYV*

>peptide 4 (40 aa)
MHRYISFISPTGKCSPFPITLSQTRLDVYICTETKRSTYV*

>peptide 5 (33 aa)
MPLPTPLGGAEAPKHAKPLTYAIIPLLCSLLSN*

>peptide 6 (37 aa)
MHRDQAINLCVVPVDVVPWLCLSTSELSHGLPSSSSW*

Sequence

>CNT30575501
CTTAGCTGCTAGCAAGTGGTCATGAGCTCATGTTGGAATAGATGACGTGACGTTCATGTTGGAATAGATGGCTATGTCACGTCTTGCAAGTTTGACTTGG
ATTACATAGCATTGTCAGACTGAGTGCACTAGCCAGTGGTTAAGACTAAGTAGCCAGTACAGTTTAGGTTGGATGAACCGTTGTTCATCCAAGCTGTAAA
TGTGAAAGCAACAAGGTGCCAAAAGAAGCATGTGGACTTGTATGACATAAAGCTGCTCAAAGCAGAGTCATCTGCCTTGAGGGGAATGTTGTCTGGTCCG
AGACCTAACACCGGGCGGAATGGCGGATTCAGCTGCAGCTAAGCAAGCTAGGTGGGGGGTTTCGGACCAGGCTTCATTCCCCCCAACTCAACTGTTTAGT
TCTTCGGCTTCGGCACAAATCGGCGGGCGACGCTGCCAGCGTGAAGCTTCTGCAGGTAGGACGACGTTTGGCCGTGCAGCCAGCCGTCCGTGCTCCATCC
ACCATCACCATGCATCGATATATATCTTTCATCTCGCCCACTGGTAAGTGCTCTCCATTTCCTATAACTCTATCCCAGACTCGGTTGGATGTGTACATAT
GCACCGAGACCAAGCGATCAACTTATGTGTAGTGCCAGTTGATGTTGTTCCATGGTTGTGTTTGAGTACCAGTGAATTGTCTCATGGCCTTCCGTCATCT
TCGTCTTGGTAGACTAATTGCTGGTGGTTAAGTTCTTGGTTGCTTGGAGTTTGAAAAAGGTTCAGAAACTCAGCATATTGGTGTTCCCTGTGTATATACA
TTAATTGGGAAGTTGTTCACCCGTTAAGGAATTAATGAAGCTTCACTAGATAGTCTATCCGATCCCTCATTATTTGCTAATTAAGCCTCTATGTGGATAG
AGGGAAGAGAGGCTGGAGAGGGAAGAGAGATTAACTAGGACATGATAAGCAACTTAAAGCCCCTTTTGGCACCTATAATCATAGCAGCTGATAGTAGTAG
CAAACAAAGTTAAGGCCAGTGCAGCAGCATATATGCTATCAGCTGCTAGGTGGGCGTGTGGGCAATGATGGTAAACAAAGGGCTTGATCGGTTCGTGTAG
TCCTCGTTACGAATCTTTCCGATCATGGAAAGATCGCTTCCAAGATTTTCAGTAGACTACTAGAGTAACTAGACTACATGCATGTGTGACAACTGAAGCA
TCTCTGCAAAGCCATGCCGTTGCCGACACCGTTAGGTGGAGCCGAAGCACCAAAGCATGCAAAGCCCCTCACGTATGCAATCATTCCTCTTTTATGCTCT
CTTCTCTCTAATTAGCTAGCTAAAGAAAATACTTAGTTTTAAGAGCAAAGGTTGAAAAAAAGGAGGCTTAGTTGATTATTCAAGGAGTTCAAACTGAGAT
TGGTCACACCAGAAAGATTCAACACAAAAGAAAAAAGATATGCTAATCAATTACCTTGATCTAACCGTTCAACCAGCATCTGAACGATCTCATCAACCCA
GTGCTTTTTTGAGCATTGGCTTTATTCCTGCGAGTGATGCTTCATGCTTGTACGTGTGATCTGAGAAAAAAGAGGGCCGTGTTATGACAACGATGTGACC
TACAGTAACAAAGAGTTGATAAACATATCATTTAGAGAAACAACTCGTCATATATCAAGAAAGTGACAAGACGAAACAAACAGCGGGTTGATGGTAATAG
GGCAAGGAAAAGAGTGACGGCATGATCCATTTTTTCCGCTGAACTTTTGACTAAAAAGTTTTGGTGAGTGACGAAATTTCTCAGGAGCAATGAGGGGATT
GGGTACTGCTTGGAAAGACTTTACAAGGCTGCATACGTGCATCGCAGCCCACCGTGGGTACATTTCGAAGATACCATCATTTGATCATCTCATACAGCTT
TTGGTTTGCAGCATTTTTCAACTTTGAAGCGTGGGCAAGTGCCTTTCCCTCTCGCATCACGTGTTTGCAAGTGTAGGTACAGGTCCTGGTTGACATTGCC
TTCTGCCATTGTGGCTATGTGCCCTGTATAGCCACATGACAGTTCCGAGCAGTACCTTCACATATGTTCTGAATCGGCGGCAGTACAAATACTCAATTTT
TTTTCCCAATTT