Detailed information on CNT30575498


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 1e-79

BLAST vs NONCODE:
NONORUT005134, E-value = 3e-104

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30678474Oryza barthiiSetaria viridis18.8222.1893.22118forward
CNT30522059Oryza barthiiSetaria italica26.6334.3685.63167forward
CNT30189491Oryza barthiiSecale cereale17.3839.3581.65109forward
CNT30553120Oryza barthiiOryza glaberrima100101.9598.09627forward
CNT30448340Oryza barthiiSaccharum spontaneum41.3147.2686.49259forward
CNT30149Oryza barthiiZea mays35.094083.64220forward
CNT30105638Oryza barthiiOryza longistaminata76.7152.0697.71481forward

Expression of CNT30575498

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MPVDSYWAHVGSALDKRLASPFARAIDGRL*

>peptide 2 (47 aa)
MTQLSPLKYTRWGKAHPLSKVKAIESFRRSSSDCAFPSGPACMSKSL*

Sequence

>CNT30575498
CTGATCTCTGAAGGTTTCAGGATTCAGAGCAGCAGCTCTTTCCACAAGCCAAAACATGGTTCCCTTTGAAGAAGATAGAGATCTTGGCACAAGCCAAAAA
CATTGAGCGTGTTTGAGGACCTGGAACCAAGATCATCTATGAAGGAAAGTAGCCAACACAATCCAAAATGCCAAGAGCGGGAGCGTCAATGGTTGTTTTG
TTAGAGGGCTTGCATTAGGCAACCATGGATATGCATCTGGAGGTGGCATGACACAATTGTCTCCATTGAAGTACACACGGTGGGGGAAGGCCCATCCCTT
GTCAAAGGTGAAAGCCATAGAATCCTTCCGCAGAAGTAGTTCTGACTGCGCATTTCCAAGTGGGCCAGCTTGCATGAGCAAATCATTGTAGAACTTTACT
CCCCAGAACATTGCAGTATCATCTAAAATAGAAGGAACAAATTCTGTCAGAGAGGTTGAAGGAGGGAGGGGCATGTCACAGTATTCCTTGTAGTTGAGCT
TCACATGCCAGTGGATTCTTATTGGGCACATGTGGGAAGTGCATTGGACAAGAGGTTGGCCAGTCCATTTGCCAGGGCCATCGATGGCAGATTGTAAATA
GGGTGAATTCTCACTGTGGAAAGGAAT