Detailed information on CNT30575481


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30403755Oryza barthiiBeta vulgaris21.0417.2591.15113reverse complement
CNT30390237Oryza barthiiTriticum turgidum36.138.9894.33194reverse complement
CNT30592666Oryza barthiiMusa acuminata27.9315.4291.33150forward
CNT30446760Oryza barthiiSaccharum spontaneum38.1818.1695.61205reverse complement
CNT30655399Oryza barthiiRosa chinensis27.7518.5690.6149reverse complement
CNT30689226Oryza barthiiTriticum urartu37.991194.61204reverse complement
CNT30103641Oryza barthiiOryza rufipogon38.1829.8100205reverse complement

Expression of CNT30575481

Peptides detected in this lncRNA

>peptide 1 (32 aa)
MSLVKSMKGRLIHLSSLLLRCLMIRITEQMSD*

>peptide 2 (54 aa)
MPYDSYNGTNVRLRFLTTEAKKRLDQEKGGTTSPLPHASNQLAWFTGSTDVTLR*

Sequence

>CNT30575481
CTTCACTTCGTTAGGTAGCTCTCTCAAGTGATTTTGAAGAGTCAAGGAAAAAGAGCTCTCTATTAAGTGCGAGAATTAGATGTCGCTGGTGAAATCTATG
AAAGGAAGACTTATCCATTTGAGTTCTCTACTGTTGAGATGCCTTATGATTCGTATAACGGAACAAATGTCAGATTGAGGTTCTTAACTACCGAAGCGAA
GAAAAGGCTGGATCAAGAAAAGGGGGGTACTACGAGCCCTCTGCCCCACGCATCTAACCAGCTCGCGTGGTTCACCGGTTCCACCGACGTCACCCTTAGA
TAGAGTTATTCTGTCGATACAGAGATGCGCTTGAAAAGATCAAACTGATTATTGATCAAAATTTAGGGTTTGAAACTTAGGTAATTAACTTCTTCTGCGT
AACCCAAGAAGAAATTGGATCGATTTTTGAGAAATCGAATTCAGTTAAGACAAGGGAAATTAAGATAGCAATTTCTGAGCCGTATGAGGTAGGAAACTCT
CAAGTACGGTTCTAGGGGAAGGAACTACCTATTCCGA