Detailed information on CNT30575480


BLAST search results

BLAST vs Swiss-Prot:
sp|Q60E70|COBL3_ORYSJ, E-value = 1e-48

BLAST vs NONCODE:
NONORUT005134, E-value = 9e-107

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30224680Oryza barthiiHordeum vulgare51.1141.0483.75277forward
CNT3067447Oryza barthiiLeersia perrieri50.5548.590.51274forward
CNT30595883Oryza barthiiOryza meridionalis92.889.0398.41503forward
CNT30105637Oryza barthiiOryza longistaminata89.48101.2597.73485forward
CNT30101734Oryza barthiiOryza rufipogon55.3530.0391.33300forward
CNT30604101Oryza barthiiOryza punctata20.4835.8190.09111forward

Expression of CNT30575480

Peptides detected in this lncRNA

>peptide 1 (47 aa)
MTQLSPLKYTRWGKAHPLSKVKAIESFRRSSSDCAFPSGPACMSKSL*

Sequence

>CNT30575480
CTGATCTCTGAAGGTTTCAGGATTCAGAGCAGCAGCTCTTTCCACAAGCCAAAACATGGTTCCCTTTGAAGAAGATAGAGATCTTGGCACAAGCCAAAAA
CATTGAGCGTGTTTGAGGACCTGGAACCAAGATCATCTATGAAGCCAGGAAAGTAGCCAACACAATCCAAAATGCCAAGAGCGGGAGCGTCAATGGTTGT
TTTGTTAGAGGGCTTGCATTAGGCAACCATGGATATGCATCTGGAGGTGGCATGACACAATTGTCTCCATTGAAGTACACACGGTGGGGGAAGGCCCATC
CCTTGTCAAAGGTGAAAGCCATAGAATCCTTCCGCAGAAGTAGTTCTGACTGCGCATTTCCAAGTGGGCCAGCTTGCATGAGCAAATCATTGTAGAACTT
TACTCCCCAGAACATTGCAGTATCATCTAAAATAGAAGGAACAAATTCTGTCAGAGAGGTTGAAGGAGGGAGGGGCATGTCACAGGTGCATTCTATTATT
CTGAAAGTTAAGTAAAACAATTTACTTACTTATTCTGCCTCC