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Detailed information on CNT30575449


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552698Oryza barthiiOryza glaberrima10078.3299.911156forward
CNT30595765Oryza barthiiOryza meridionalis88.4183.597.951022forward
CNT30107393Oryza barthiiOryza longistaminata52.643.8498.85608forward

Expression of CNT30575449

Peptides detected in this lncRNA

>peptide 1 (76 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRFAGISLGMPSE*

>peptide 2 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

>peptide 3 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

Sequence

>CNT30575449
CGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCG
CCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTG
CAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCA
AGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAAC
TCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACTCAT
CAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGTT
CCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTATTGTTGTTTACTCTGATCAGATTACGTCGTCTCTACATTG
TGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGTTTGCAGGAATTTCTCT
AGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTC
ATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAAAAGATGTATGACTGTTCTCAAG
CAAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAACATGCTACCTAGTGCATTCCTAGAATCCTAGTTAGTGTCTTAAACCTTGGTTGAT
GAGCGTTCCAAGCTGCTTATCCCTATTCAGCAGAATGCAAGGTTTGTAGGGATTAC