Detailed information on CNT30575447


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691387Oryza barthiiOryza sativa31.8415.2499.59724forward
CNT30595715Oryza barthiiOryza meridionalis46.2674.1498.291052forward
CNT30100463Oryza barthiiOryza rufipogon20.9844.0999.58477forward

Expression of CNT30575447

Peptides detected in this lncRNA

>peptide 1 (45 aa)
SRPRPRPPPKSQCLSPLAPAVPSPRRCRCGARVVSQVSVRAFPFQ*

>peptide 2 (34 aa)
MRLNNICLLLEGKRCMTVLKQMKNSSFYEVNFCC*

>peptide 3 (29 aa)
MCKISMNEWFTASMANSAILTRKNSSFFN*

>peptide 4 (74 aa)
MKIVPSVLIMKAAHVNCLVHPDHLLLFTLIRLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

>peptide 5 (50 aa)
MEAGTCFDNVDIILMVLLNLLINKNIFISMDASATRQLQMNSSTYEHLAR*

>peptide 6 (58 aa)
MPFSASSRRPLPSTVPVRRARGFSGERPSFSLSVKSMFMCLFLCLYTCRCYSLHWRTM*

Sequence

>CNT30575447
CTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCGCCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTG
GTTTCTCAGGTGAGCGTCCGAGCTTTTCCCTTTCAGTGAAAAGTATGTTCATGTGCTTGTTTTTATGCTTGTATACGTGCCGTTGCTATAGCTTGCATTG
GAGGACGATGTGAGAAGCTCGGGCTTCTGCCGTGTTTCGATTTTTTCCGTTTGGATCTAGAAAAGCCCTTCGGGGTACAGTATTAGCATATCAGGGCATA
CGTCATACTGTGACTGTTTGCTTGCGTGCGCAGACACTCGAGGGAATTATGGGTGGAGAGTGAGACCACAATGCCAGGAAATTATAGTCAACTTAAAGTT
TGGTGGATTTACAAATTAAGTAGTGGTGTTGGATTGTGTCCACTTTTGTTTGAATAATAATGCGATGTAGGAGCTACATTTCAGTGCTATAAGAAGAAGT
ATGTAACACAAACTCCAGTCTCCGCTTCCCTTCTAACATCATCCTTCCATGTGATGTTTCCCTGGTAACAGATTTGTTAATGGCTTTGTCCCTTGGATAC
TAACATTGTAGTGCCAACAAGTTGTGAACCTGCGCGCATTTGAAGAATTGGTCTTAGGAGTTTGAATGATGTGTTTTTGCTAAACTGTAGGACGCAGTAG
ATCTAAATCATAAATTCCTTTTAGAAAACGGTGAAATTTGCCTGCATGTTTTAGAAAATTCAATTATTGGGCTAGATCTTGTTCAATTTTCGCTAGGCTA
TCAGGCAGATGCATGCATATGTTACTGTTTTAATGAGGAAGATGAAACTATGATTGTTTTCCAAATTACCCGTATGGCTTTACTTTGAGAGTTTTCCTCT
CTATGATTAGATAGAGCGAGGAAGCATTCATATGTTTCTTCTCTGTGGAGGTCCTTTTATTGTATGTGCAAAATCAGTATGAATGAATGGTTCACTGCTT
CCATGGCAAACTCAGCTATATTAACACGAAAGAACAGCAGTTTTTTTAATTGATAAGAGTACAGTTTTTGGTGTGAGCCAATACTACATGGTATCTAGTT
ATTCTTTGCGATTGTGCTGATCTGTTACATCTACTAGTTCCAGTTACTTCAGCTCCACTCCCAAAATGTTGCTCTAAATTCGATCTACTGCTTTATGACA
GATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTGCAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAA
GTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCAAGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAA
TTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAACTCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAA
TATGAAAACTAGATGGAGGCAGGTACATGTTTTGACAATGTTGACATTATCTTAATGGTTCTTCTAAATCTTTTGATTAACAAAAATATATTTATTTCCA
TGGATGCTAGTGCCACCAGGCAATTGCAAATGAACTCATCAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCT
GGTAAGGAAGTCAAACATCTAATATGTATGAAAATTGTTCCTAGTGTTCTTATAATGAAGGCTGCACATGTAAACTGTTTAGTCCATCCTGATCATCTAT
TGTTGTTTACTCTGATCAGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGG
CAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTT
TGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTG
TCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGA
AGGAAAAAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATGAAGTTAATTTCTGCTGTTAAC