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Detailed information on CNT30575438


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552882Oryza barthiiOryza glaberrima53.5373.7899.71349forward
CNT30108176Oryza barthiiOryza longistaminata96.9392.488.92632forward
CNT30100371Oryza barthiiOryza rufipogon10056.9999.54652forward

Expression of CNT30575438

Peptides detected in this lncRNA

>peptide 1 (50 aa)
SVEARGGCDWVSQARGAVEASGGRWGRRLRALGVCVASSIRAGGRSLSRS*

>peptide 2 (54 aa)
MHLLSRLWFRENSWVFLFASLLCTVYAVDFYYLICRHFSFGFINSGNNFNLYVH*

>peptide 3 (60 aa)
VRRSAGRLRLGKPGAWSGGGKRRPVGEAAACARCLRRIEHSSWWKEPIEELSKRAVVPDY*

Sequence

>CNT30575438
AGTCCGTAGAAGCGCGGGGAGGCTGCGACTGGGTAAGCCAGGCGCGTGGAGCGGTGGAGGCAAGCGGCGGCCGGTGGGGGAGGCGGCTGCGTGCGCTCGG
TGTCTGCGTCGCATCGAGCATTCGAGCTGGTGGAAGGAGCCTATCGAGGAGCTGAGCAAGCGAGCTGTGGTTCCCGATTACTGATTTCCTGGTGGCTGAA
AATCAGCGACGGAAGGTATCTCAAAGAGATTTGAATAGCTATTTTAACCGTGGGTGATGTGCCACCAACCCCAACTACTTGTGGCAATGGAATTGTTGCG
GTGGAAGAGGCTGCGCTGAACAGGTAGAAGGGGTCGTGGAAGTACAATTGGGTTCATTTCATATTGCTGGACGAGCGGAAGAGAGAACTCAACGTCCAGT
GGCTAGTGAATCCAAGTGAAGATGCACCTGTTATCCAGGCTCTGGTTCAGGGAGAATAGTTGGGTGTTCTTGTTTGCAAGTTTGTTGTGTACCGTCTATG
CAGTAGACTTTTATTATTTGATTTGCAGACATTTTAGCTTCGGTTTCATTAACTCAGGCAACAATTTCAACTTATATGTCCATTAATTATCTATTTGTAG
TGCGTGTTATATGGCATTAATCTTTTTATAGGTAAATAATATCATGCATAAG