Detailed information on CNT30575434


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691571Oryza barthiiOryza sativa81.36100.2499.42510forward
CNT30184327Oryza barthiiSecale cereale4.2561.586.26131forward
CNT30398990Oryza barthiiTriticum turgidum4.1529.9185.94128forward
CNT30459409Oryza barthiiSaccharum spontaneum4.5439.5590.71140forward
CNT30716144Oryza barthiiMalus domestica golden2.1121.3886.1565forward
CNT30595788Oryza barthiiOryza meridionalis20.1951.4593.58623forward
CNT30369516Oryza barthiiOryza glumipatula80.42100.0499.482481forward
CNT30100164Oryza barthiiOryza rufipogon21.8810098.96675forward
CNT30115919Oryza barthiiOryza nivara7.5510099.14233reverse complement
CNT30603626Oryza barthiiOryza punctata55.7268.3586.791719forward

Expression of CNT30575434

Peptides detected in this lncRNA

>peptide 1 (63 aa)
MLFSSNLCSIILHYHQMLLLPIQYSASSCIVHCFILFKVCLFLLMLRLRIARLLSSYALLLMH*

>peptide 2 (62 aa)
MDVRYSDRFSMCWVLFSEFVVVIRCSEITALYLGPMQSAKSLSCQKDVHGFSIICKLEVGLP*

>peptide 3 (68 aa)
MRGLQLLPTSSSEDSVLSDCAHILCAYSAPLRGVCWSSPVIGVGTISIRHNTHQFFIYGIWKEKVGKC*

>peptide 4 (40 aa)
MLVFAYVEITNCSVTFVLCITVDALTEGDRLVLLPAPEHA*

>peptide 5 (30 aa)
MSDGIFEPKIEGKRRISVGACYVLQFFETM*

>peptide 6 (52 aa)
MITSKILMNFFYKKVCVYIYSKQCVCNSVTTPAACLHQPEGFRNNFSLYSSA*

>peptide 7 (33 aa)
MQRNYCAVSWTNAISEVLIVPKGCAWIFHHLQT*

>peptide 8 (36 aa)
MLSDSHSSNISRCGICVAQVHQSVIVVQSSVLIILD*

>peptide 9 (39 aa)
MWDMRSTSASECYSCSVFSAYYSRLIWTNLSIQLTLVFV*

>peptide 10 (36 aa)
MNIIPSAAVKFLCVDGLFLKIYIFYVYNCLSSLLVN*

>peptide 11 (33 aa)
MAGTRGGFELLHMVAPSMRQQPHYLQERHKIIR*

>peptide 12 (35 aa)
MITCGFLASCAVAASSLLPPSAKSISKKRKSCQFP*

>peptide 13 (33 aa)
MMSTVSNVNSRQIRFIPFWCLVSFCIFHERWHF*

>peptide 14 (35 aa)
VQSPLHQDNITKVTPELINEHRSLFPRYASDTCSI*

>peptide 15 (30 aa)
MSVSLNYIHMINLETQYVAKNHTQLNHICI*

>peptide 16 (31 aa)
MYPCCSGFVALQPFCLRYWHLLFRKPFSNSF*

Sequence

>CNT30575434
GTTCAGAGTCCCCTTCACCAGGACAACATTACAAAAGTTACACCCGAATTGATTAACGAGCACAGATCTCTCTTTCCACGCTACGCATCCGACACCTGTT
CCATTTAAAATCCGCCCGGGCCGACGTGGCCGCCTGCGCGGCCACAACCCTCTCCCCGCGACGTAATTAAACTAATCCCCGCTTAACCCAAATCTTCCCC
TCCTAATCCCTTTCGCCGCGCTCCGTTCCCTCCCTCCTCTCGTCCCCTTCGCCAAAAAAGCCGAACTCCACTACGCCAATTTTCCTGCCTTTTCTACCCC
CCACTTGGAATTCTGGAAACATCGATTCGATCCTTCTAGACCCTTCTCCGCCCCCGTTTTAAAGTGCGCCGGCCTCCCACCCGTCGCTTCATCGCTCGCG
GTCGCAGTCGCAGTCGCAGTCGCCCACACCCTTGCCGCACCATGGCTGGAACCCGCGGCGGATTCGAGTTATTGCACATGGTGGCACCAAGCATGAGGCA
ACAACCGCATTACTTGCAAGAAAGGCACAAAATCATTAGATGATTACTTGTGGCTTTCTTGCAAGTTGTGCAGTTGCTGCCTCAAGCTTGCTGCCTCCCT
CTGCCAAATCTATCAGCAAAAAAAGAAAATCATGTCAGTTTCCTTGAACTATATACATATGATTAATCTAGAAACGCAGTATGTTGCCAAAAATCACACA
CAACTCAATCACATATGCATTTGAGATGAGGTAAAATGCTATCTGATTCACATAGTTCCAATATCTCAAGATGTGGGATATGCGTAGCACAAGTGCATCA
GAGTGTTATAGTTGTTCAGTCTTCAGTGCTTATTATTCTAGATTAATTTGGACCAACTTGTCAATTCAGCTGACACTTGTTTTTGTCTAGTGCTCCAGTA
GCTTGGTTGTTTCATCATCATTAGACTTTTAAACCTTTGGTCCTAAACTCCTAGCTGAAAATTTTGCACACTGAACTTCCCTGTGTTCTAAGGAAAAAAA
AAATCTAGACATAACCTTGCTGATCTGTATTATGGACTGGCCATTGGAGTGCATAATGCATAACTGCTGATCACTTTGTTGGCACAAAACTTACGCATAG
ACATAGGAGGTACTTATGTATAATTGTGTCTTTAATCAGGACTTTGTTTTCAACCATTTTGTTGATATAACAGTTATACTGTAGTAATGATGAGTACAGT
CTCCAATGTAAACTCAAGGCAAATCAGATTTATCCCTTTTTGGTGCTTGGTATCTTTTTGTATTTTTCATGAGCGATGGCATTTTTGAACCCAAAATAGA
GGGAAAGAGAAGGATCTCTGTGGGGGCATGCTATGTACTACAGTTCTTTGAGACCATGTAGGTGTGGATGCTTGTTTTGACCTTTTCCTTAACATATAGA
AAGAATAAACATTAAATAAATGATGACATGGAAATGAAATTCATAAAGGAGTACATAAGCTAGTACTCCTGAAAATATCACTTCATATTCCCCCATGATT
CAGTAACATGAATATCATACCATCAGCAGCAGTGAAATTTTTATGCGTAGACGGTTTGTTTCTTAAGATATATATTTTTTATGTTTACAATTGTCTGTCG
AGTTTACTGGTCAATTGAGCAACAACGGTACTTTTAACTGTTAATATCACTTGGTTTGCTATGTATCCTTGTTGTTCTGGCTTTGTTGCTTTACAGCCAT
TCTGCTTACGCTATTGGCATCTGTTATTTAGAAAACCATTTTCTAACAGTTTTTAGATTTCCTTTCGAGTCTCCAACTGTTTTTAACCTCCAAGTTGCCA
CATAATGCATAAATATACCGAGTAAGTTTGCCCCCCTCTGAAATATGGATGTTAGATACTCAGACAGGTTCAGTATGTGTTGGGTGTTGTTTTCTGAGTT
TGTGGTTGTCATAAGATGCAGCGAAATTACTGCGCTGTATCTTGGACCAATGCAATCAGCGAAGTCCTTATCGTGCCAAAAGGATGTGCATGGATTTTCC
ATCATTTGCAAACTTGAGGTTGGCCTGCCCTGATGCCCTCAGATGCTGATGAAGTGTGTGGTTCATGAAAACGTGAGAAGCTAAGTAGTGGAGTAACGGG
AGTGAGTACCAGTGTGGCCACTATGAAGAAAGTTAATTACTGAGAAATTAAGACTTGAGCATGTTATTTTCAAGCAACTTGTGCAGCATTATATTGCACT
ACCATCAAATGCTTCTCCTGCCTATACAATACTCTGCAAGCTCTTGTATTGTACACTGTTTTATCTTGTTTAAAGTATGCTTGTTTTTGCTTATGTTGAG
ATTACGAATTGCTCGGTTACTTTCGTCCTATGCATTACTGTTGATGCATTAACCGAGGGAGATCGACTAGTGCTTCTTCCTGCTCCAGAACACGCTTGAT
AATTGAGGAGTTTGCAGGGGCTTAGTTAGATTATGGTTGGGCCCAGTGTCCTAATCTAGGAACCTGCAGCAATCTGCCCCCTTTGGCCCATGCGTGGCTT
GCAGCTCTTGCCAACCTCAAGTTCAGAAGATTCTGTACTATCGGATTGTGCGCATATATTGTGCGCATATTCAGCTCCTTTGAGGGGAGTTTGCTGGAGT
TCTCCAGTTATAGGAGTTGGTACTATCAGCATTAGGCACAACACGCATCAGTTTTTTATATATGGCATCTGGAAGGAGAAGGTAGGAAAATGTTGAGGGC
GCTTTGAATCACAGAAATGCAAGTGTAAGTGTAAAACAGATGATTACAAAACACATAAAAAATATATAAATGACCGTTTGATTATGCCGTTGGAAAAACA
CAAGAATTCCTCCAAAACTTATACGAGAAAAAGACATTCCATAGGAATTTTGTAAGATTTCATATAATTCATTATTTTGATTTAAAAAGGACTATATAGA
AAAAAAACTCCTAGAAATGATAACATCTAAAATTCTCATGAATTTTTTTTATAAAAAGGTTTGCGTCTATATATACAGTAAACAATGTGTATGTAATTCA
GTAACAACCCCTGCTGCATGCCTCCATCAGCCAGAGGGGTTCAGAAATAATTTCTCACTATATTCTTCAGCGTGAGCAGTGCACC