Detailed information on CNT30575420


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30695229Oryza barthiiOryza sativa23.9153.6786.31482forward
CNT30552747Oryza barthiiOryza glaberrima93.1198.3299.841877forward
CNT30109186Oryza barthiiOryza longistaminata29.7646.0195.33600forward
CNT30100090Oryza barthiiOryza rufipogon15.9728.495.34322forward
CNT30115521Oryza barthiiOryza nivara19.7435.593.72398forward

Expression of CNT30575420

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MALLTSNCIAIQVLALGIFQAILLSHIQN*

>peptide 2 (35 aa)
MASRRSFRDCLRKVFDTLFFFRDCLRKLYGCAALW*

>peptide 3 (97 aa)
MRLFLPPPPRQVLYYLFEPFCCSKLILILGEFIDIEAFIEYVSFCFHFGSINSYNWCFGILLLIWHPCGHKFASWFHILHKHMHTSCLYNAWQDESL*

>peptide 4 (87 aa)
MLAFRFQVPSMLTWLIGGWLQGEASEIVSEKFSILSSSSEIVSGSCMAVQLFGDIKEKITIWREAGFMVGEKRLVLFLSQFFLSRSL*

>peptide 5 (68 aa)
MFPFASILVQSIHTIGASVYCYSFGTLVDINLLPGSTFFTNICTQAVCTMLGKMNLCDYSVFAICVIN*

>peptide 6 (55 aa)
CTPPLASRRPPHSPPRKPMSSLATATAAAELHCCHRSSAKHFHFSVFLVYHFANI*

>peptide 7 (81 aa)
MCISEYIFCGKLLWQSQLLSRVKIFMWLALKGRCLMADNLQKIGGLIRRIAPYATWHFEMTPNLLFNVLSQTGFGDCSGAK*

>peptide 8 (68 aa)
VHSTAGEPTSSPFAAEEADVVPSHRHCRRRTPLLPQELCKAFPFLSVSCLPLCQYIIFKFQKLLEILL*

>peptide 9 (52 aa)
MKPCIYTFKTISCPRRCCYMMKEERLIGLCLASFGYSTKILGNSLILFLIQQ*

>peptide 10 (48 aa)
MSVISFPGKYLLKIYVTAPKCIRVWKMLQTKAIQTHIHLFTVSIRVIL*

Sequence

>CNT30575420
GTGCACTCCACCGCTGGCGAGCCGACGTCCTCCCCATTCGCCGCCGAGGAAGCCGATGTCGTCCCTAGCCACCGCCACTGCCGCCGCCGAACTCCACTGC
TGCCACAGGAGCTCTGCAAAGCATTTCCATTTCTCAGTGTTTCTTGTTTACCACTTTGCCAATATATAATTTTCAAGTTTCAGAAGCTTCTTGAGATATT
ATTGTGAGGTAATAATATGTTGCTCATGCTAGCAGCTGAGAACTCTGCCATCTGAATTAAAATTTGGTACATCTCCATCTAATCCCATGATAAATAGTGA
TAACCTATTTCTGAAATATTTAGATCCCACACTTTTTTAATCTCAAATTATGAAACCCTGTATATATACATTCAAGACAATTTCCTGTCCAAGACGATGC
TGCTACATGATGAAAGAAGAAAGGTTGATAGGTCTATGTCTAGCTTCTTTTGGTTATTCAACTAAGATATTAGGCAATAGTCTTATCTTATTTTTGATAC
AACAATAAGTGACTTCATGTTCACATTTTTTTACACTGAAATTGATTGTGCAACCTAGATTTCTTTGCAGTTTTACCGGCTTGTTCATACGATGGAGAGG
ATAGTGTAAGTTCAGACCCACCAAATGCGTCTTTTCCTACCTCCACCCCCAAGACAAGTTTTGTATTATCTCTTCGAGCCTTTCTGTTGTAGCAAGCTGA
TTCTGATTCTCGGTGAGTTCATAGATATCGAGGCATTCATTGAGTATGTTTCCTTTTGCTTCCATTTTGGTTCAATCAATTCATACAATTGGTGCTTCGG
TATACTGCTACTCATTTGGCACCCTTGTGGACATAAATTTGCTTCCTGGTTCCACATTCTTCACAAACATATGCACACAAGCTGTTTGTACAATGCTTGG
CAAGATGAATCTTTGTGATTATAGTGTATTTGCTATTTGTGTTATCAACTAACTGTTGGCAGAATCGCTGGTAACTGTATTGCCATGGCCCTGCTCACCA
GTAACTGTATTGCCATTCAGGTTTTAGCCCTTGGCATCTTCCAAGCCATTTTGCTTTCACATATTCAGAATTGACTGAAATTCATTTATCGTTACAACTA
ATGTCGGTGATCAGTTTTCCTGGAAAATATTTGTTGAAAATATATGTAACAGCACCCAAATGTATTAGGGTGTGGAAAATGCTTCAAACTAAGGCTATTC
AGACCCATATTCACCTATTTACAGTGAGCATTAGGGTCATTTTATAGAAAACGTTGTCGAGGAGATCTAGAAGTTATTATAAGTTAGGTCTGCTGCTTCA
TTATAATAGATCATATGTGTATTTCTGAATATATCTTCTGTGGCAAGCTGCTTTGGCAATCCCAGTTGCTGTCCAGAGTAAAGATTTTCATGTGGCTTGC
GCTAAAGGGCAGATGCCTCATGGCTGACAATCTACAGAAAATAGGTGGCCTCATCAGGCGAATTGCTCCCTATGCAACCTGGCATTTCGAGATGACACCC
AACCTTTTGTTCAATGTGCTTTCACAAACAGGATTTGGAGATTGCTCAGGAGCTAAGTGAATGTTGGCTTTCCGCTTCCAAGTGCCCTCAATGTTGACTT
GGCTGATTGGCGGATGGCTTCAAGGAGAAGCTTCAGAGATTGTCTCAGAAAAGTTTTCGATACTCTCTTCTTCTTCAGAGATTGTCTCAGGAAGTTGTAT
GGCTGTGCAGCTCTTTGGTGACATCAAAGAAAAAATCACAATCTGGAGGGAGGCAGGCTTCATGGTAGGCGAAAAACGATTGGTATTATTCCTTTCGCAG
TTTTTTCTCTCCCGCTCTTTGTAACCGGTTTTGACAGCTTCTTGTGGATGCTTAGTTTGTAACACCATCTTCTAATCTTAATGAATTTGCTTAGCCTACT
CTTGGGCCAGTCTGGCTAAAATAAATGCAATCAGAGTTATACTTCATTTGTCGGAAACATAACTTGTAAAAATAAAACCAATCATTTTTATCCTAACAAA
AGACTGCTCAATGCTG