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Detailed information on CNT30575418


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT3066850Oryza barthiiLeersia perrieri41.2739.4489.14267forward
CNT30116874Oryza barthiiOryza nivara86.8695.2599.47562forward
CNT30603633Oryza barthiiOryza punctata47.9147.1197.1310forward

Expression of CNT30575418

Peptides detected in this lncRNA

>peptide 1 (89 aa)
MNKPASHKSAIVSSDWSLLLSLSNLVSFPCNLIPVVSTFYCSPLQRSLQLYLVEADKKLSRCNLVLWSQMFACVLLGNILSEMLIFILKD

>peptide 2 (44 aa)
GMFSKINVLNTVNFVFYLSLPFFPIKRTTLASLKCHRASSWLSH*

>peptide 3 (39 aa)
MVLEIGSSISSMRMEKNGCAVPSPPPSQELYSLSMPFMA*

>peptide 4 (37 aa)
MAVLFLLLLLLKNSTVCPCLSWHNSLDSRISGWLREV*

Sequence

>CNT30575418
GGCATGTTCAGTAAAATAAACGTACTGAACACAGTAAACTTTGTTTTCTACCTTTCATTGCCATTCTTTCCCATAAAGCGCACCACACTAGCCTCTTTAA
AATGCCACCGTGCAAGTTCTTGGCTCTCTCACTAGTCCCCTAGCTTTTGCCTCATCAACAGCTGAGCATTTGCAACTTCAATCAGATCATGGTCGGTGCA
TGGCAGGAGCATCTTCATGGTTCTTGAGATCGGGAGCAGCATAAGCAGTATGAGGATGGAGAAGAATGGCTGTGCTGTTCCTTCTCCTCCTCCTTCTCAA
GAACTCTACAGTTTGTCCATGCCTTTCATGGCATAATTCCCTGGATTCCAGAATCTCTGGGTGGCTTAGGGAGGTATGAACAAACCGGCAAGTCATAAAT
CGGCAATAGTGAGCTCCGACTGGAGCTTACTCCTCAGTTTATCAAATTTAGTTTCATTCCCTTGTAACCTTATTCCAGTTGTTTCAACTTTCTATTGTTC
CCCCTTACAAAGGTCATTGCAATTGTATCTTGTGGAAGCAGATAAGAAGTTGTCTCGGTGTAATCTTGTTTTGTGGAGTCAAATGTTTGCTTGTGTGTTG
CTTGGGAATATTTTATCCGAGATGCTCATATTTATCTTGAAAGATAG