« Back to Oryza barthii search


Detailed information on CNT30575404


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT000867, E-value = 3e-138

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30117301Oryza barthiiOryza nivara49.7662.9698.04408forward

Expression of CNT30575404

Peptides detected in this lncRNA

>peptide 1 (37 aa)
MVWIVWFISVLTFLITACRDVRIFRGDSAEISNNFRT*

Sequence

>CNT30575404
CGCTGAGTAGTGCAAAATAGACTATAAATTTATAGTAATCGGAGTCCGAACGAAGTCCCGAGGATTGAATAGATGTGAGCCGTTAGATCTTATTTAGTCT
CTTTATATAACCAACCAAAAAAACGAAAAAAAAAGAAACAGGAGAATCGCTCCTGTAGCCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCT
GTTCCTGTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGTCGCCGGTCGCCACAGCCGTCGTCGTCCACAGCTGGTCGTTGGAAGGAGGGAGAGAAGGCAGA
GAAGAACAGGAAGGAAGGAAAGAAGGGGAAATTTGATAGACGAAGGGAAATTTGGGGAATTTGGTGAATATTTCCAAATTCTTCGTTTTTCTTATACATT
AGTACTGCTAGGTGTGGAGGGTTCCAACGTTGGAGGAGTTGAGTCGGAGTATCGAAGGAGTTAAGGTACCTAATGACATCGATCGGCATGGGGCGGGAGT
AGCACCCTTGGACTACACATTATTATTGCACACAATTGAAATTAGATTTAGACTATATTTTTTGCTCAGCAAAAGTTTTGCATAGAACTTGTAAAGGTCA
TTTAAGGTTCTGATCCTTATTTTTCACTAGGAATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCAGTATTGACCTTTCTTATAACTGCCTG
TCGTGATGTCCGTATTTTTAGGGGAGACTCTGCCGAAATTTCTAATAATTTTAGGACTTAGTTTTTGAGTGTATTTTGGTGTGGCATTCTAGGTACGTGG
TTACCTGGGGTGTTACATTT