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Detailed information on CNT30575398


BLAST search results

BLAST vs Swiss-Prot:
sp|P85087|GLNA_VITSX, E-value = 6e-10

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364720Oryza barthiiSorghum bicolor25.5523.9790.79152forward

Expression of CNT30575398

Peptides detected in this lncRNA

>peptide 1 (60 aa)
MADEQCSSSSSMQPNRNGMRIFFGVIFFFFSFLFFLLLPAQMQFTRSSDQWSDTASWGGR*

>peptide 2 (34 aa)
QRRHLLKNGGSSNAKATAIGSPASPARTLYKGDH*

Sequence

>CNT30575398
CAACGGCGTCATCTATTAAAAAACGGAGGGAGCAGTAACGCAAAAGCCACGGCTATTGGAAGCCCAGCAAGCCCAGCAAGAACTTTATATAAAGGTGATC
ACTAATAACAATGATGATAAAACCACATGTGGAAAGGAGGACGATGATCCACAGGATGGGACAAGTACCGTAGGTACGGCCATTATTGGAGGATTACACA
AGAGCACCCAAACGCACTCACCCAAAAGACGAAGAAAAAGCTAATCTAAATGGCAGATGAGCAATGTAGTAGTAGTAGTAGCATGCAACCAAATCGAAAT
GGAATGAGAATTTTTTTTGGCGTGATTTTCTTTTTTTTCTCTTTCCTTTTTTTTTTACTTCTCCCAGCACAAATGCAATTCACCAGATCGTCCGATCAAT
GGAGCGACACGGCGAGCTGGGGAGGACGATGACGAGGATGTCGTGGTGTTGATGTCGGCGGTCTCGTGCCTGCCGGTGAGCCGGCGCTCGTTGCCCTCGC
CGTAGGCGGAGATGTGCTCCTTGTGCCTGAGCTTGAGCTTCTCAATGGCGGACTTGATGATCTCGTAGCCACCATCGTTCCTCATCGACTTGGTG