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Detailed information on CNT30575396


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691472Oryza barthiiOryza sativa56.6790.6899.55671forward
CNT30554335Oryza barthiiOryza glaberrima47.324.0895.18560forward
CNT30100246Oryza barthiiOryza rufipogon30.8346.2699.45365forward

Expression of CNT30575396

Peptides detected in this lncRNA

>peptide 1 (42 aa)
GSSRMRGSFSALASTRRCHRCLGSEHSRWIASPFPPPLGKSG*

>peptide 2 (40 aa)
MKINCEGEHQQKIKDDQFMQNTPSASKLSISISSIGNSLQ*

>peptide 3 (65 aa)
MVHRGGRSTTVLSDSDLVPPSSIPIQPIQPSLSRRSTPPPPSLPNLSGARPPLADLLMVYLWIRS*

>peptide 4 (62 aa)
WIVQNARVILGTGEHTALPSLSWLRAQPLDRVAVPAASRQIRMSCCTTSFASSSSRKRPKNP*

>peptide 5 (31 aa)
MVVVAYRQWRSWNHIEGGALLYYIDGGNYSK*

>peptide 6 (38 aa)
LDRPECEGHSRHWRAHGVAIVVLAQSTAAGSRRRSRRL*

>peptide 7 (33 aa)
MLRKFMMVTTTWYLLFKLGIFGNIVKRGCLCYL*

Sequence

>CNT30575396
CTGGATCGTCCAGAATGCGAGGGTCATTCTCGGCACTGGCGAGCACACGGCGTTGCCATCGTTGTCTTGGCTCAGAGCACAGCCGCTGGATCGCGTCGCC
GTTCCCGCCGCCTCTAGGCAAATCCGGATGAGCTGCTGCACCACTAGCTTCGCCTCATCATCCTCTCGGAAACGCCCCAAGAATCCCTAAGAATGGTGCA
TCGAGGAGGGAGATCGACCACCGTCTTGTCTGACTCCGACCTAGTGCCTCCGTCGTCGATTCCCATCCAACCGATCCAGCCATCGCTGAGTCGCCGGTCT
ACTCCACCGCCACCCTCGCTGCCCAACCTCTCCGGAGCTCGTCCACCCTTGGCCGACCTCTTGATGGTGTATTTGTGGATTCGTTCGTGATGTGAGCAGG
ACCAGAGAAGTATTATGTGACAACAAATCAAGGCAAGCCCTATTCAATTCCTCCTTCGATCATGTTGAATCCTATATGTTGCAAATGCTTTGTTATTTAT
AAATTGCATGAGATGTTTTAAACTTGGGTTATGGTAGAACGACTCCGTCTTGTTGCATTGTCTACCTTGACTTATTGATTATCCTTGCTGTTGATACACC
TAGGATGGGTTGTGGTGTTGTCTAAGCACCAATGTGGGTATATTCGAGCTAATACTAAAGCTACTTGCTTAGCCATGCTTAGAAAATTTATGATGGTTAC
AACTACATGGTATTTACTCTTTAAACTCGGGATATTTGGAAATATTGTTAAGAGGGGTTGCCTCTGTTATTTGTGAAAAAAGAAAACTGACAATGATGAT
TTTAGATTGGGGCGGCAAATGATGTGCATATGGTGGTAGTTGCATATCGACAGTGGCGGAGCTGGAACCATATTGAGGGTGGTGCCCTACTTTACTATAT
AGATGGCGGCAATTACTCTAAATAATGGTATTTTTTCATTTATAGATAACTATTGACACAAAAAATCATGGAGTAGCAAGTAAAAGTGCTTACCAAAATA
TAGGATGAAAATAAACTGCGAAGGAGAACATCAACAAAAAATAAAAGACGATCAATTTATGCAAAATACACCCTCGGCCTCAAAGCTGTCAATCTCAATA
TCATCGATAGGTAATAGCCTACAATAAAAGTAGAAGAAAGGCAAATAAGTGTAGTGAATTTCCTGATGGAGCTCTGGTTTGTGC