Detailed information on CNT30575390


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691132Oryza barthiiOryza sativa94.1597.799.411190forward
CNT30105994Oryza barthiiOryza longistaminata28.4894.2498.06360forward
CNT30100377Oryza barthiiOryza rufipogon76.594.899.69967forward

Expression of CNT30575390

Peptides detected in this lncRNA

>peptide 1 (30 aa)
MQSVYPVLSRGKDLPFHGPRSTLFITNQSR*

>peptide 2 (30 aa)
MEVCGLVMWEEPSLSGFKLFLLLLSLAHGQ*

>peptide 3 (79 aa)
MVQTQVLASPKYQKSSSPSSLLLHQYPSSHTAQRLIDQRSCQTGVFVVDLCLLCTHIYRVHTEARAVGALRCQPQNLLH*

>peptide 4 (53 aa)
RRRAAASPATGGDELLQASFFLMINLVLPSPRRCLTIGDCSATFLKYLGLSLS*

>peptide 5 (41 aa)
MFDNWRLQRNFSQISRPFFVLMKRSLQDWKKEVILGNACCV*

>peptide 6 (30 aa)
MPDRLLCKPRRKVQCRDLLVISSRWYKPRC*

Sequence

>CNT30575390
GCGGCGGCGCGCGGCGGCGTCGCCGGCGACGGGCGGAGATGAGTTGTTGCAGGCCTCCTTTTTCTTGATGATAAACTTGGTATTGCCTTCTCCTAGAAGA
TGTTTGACAATTGGAGACTGCAGCGCAACTTTTCTCAAATATCTAGGCCTTTCTTTGTCCTAATGAAGAGAAGTTTGCAAGATTGGAAAAAAGAAGTGAT
TCTTGGCAATGCCTGTTGTGTATAGAACATTTTATTCACTTGGGTGCCACTGATAAGCCTAATTCACCATGAACACCTCTCAGTTGGGTTTTTGTACTTT
AGCCTGCACTCTGTATCTTTATTTATGCAGGAGGGATTACTCCGGATAAATCATAAAGGGTCTAGATCCAATGTCACGAAGACAACTTCTGCATTCTGTC
TGAGGATATGACGATTCACAACTGAACCATGCCTGACAGATTATTGTGCAAACCGAGGCGAAAAGTTCAGTGCAGAGATCTGCTCGTCATTTCGTCGAGA
TGGTACAAACCCAGGTGCTAGCTTCTCCAAAATACCAAAAGAGCTCCAGTCCCAGCTCTCTCCTACTTCATCAGTATCCTTCTTCCCACACAGCTCAGAG
GTTGATCGATCAACGATCTTGCCAAACGGGCGTTTTCGTTGTCGACCTCTGTCTCCTTTGTACGCATATATACCGCGTACATACGGAGGCGCGCGCAGTG
GGCGCGCTGCGCTGCCAGCCCCAAAATCTGCTCCATTAGTTGCTTGTTTGGGAGCGCTCCTCGCTGAGCTTTGTCCCCAACGGGATCACGAGAGGGGGAG
GAACAAGTTGCCCAGATTTTGGACCCTTGCCAATGGAAGTGTGTGGGCTTGTCATGTGGGAAGAGCCGTCGCTTTCAGGGTTTAAGCTGTTTCTGCTCCT
CCTCTCTCTTGCTCATGGGCAATAAGTGAGATTTTGGTTGCGCATTAGAGGGATGTGTGCCATGTTTATTGCAGCTTTGGCTTTATTTTAGTCCCTCGAC
CTCTCCCAAGTGATGATAAAGACTGGTTGAATAGTCAGCAGGCAGGCCGTAGAATGGCTAGCGTATGTAACAGTATGATGAGATCATGCAATCAGTATAT
CCTGTTCTGAGTCGTGGAAAAGATTTGCCCTTTCATGGACCTAGGTCGACTCTGTTCATCACAAATCAGAGCAGGTAAAAATATTTTTCCTAAACAGTAG
TATATTTTTAATCTTTGAACTGATGATGGTATAAATGTCTTGTTGATGTTGCTGTAGGCTCTGG