Detailed information on CNT30575387


BLAST search results

BLAST vs Swiss-Prot:
sp|P69309|UBIQP_AVEFA, E-value = 4e-71

BLAST vs NONCODE:
NONMEST001181, E-value = 2e-86

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691328Oryza barthiiOryza sativa100.1777.3399.3573forward
CNT30225149Oryza barthiiHordeum vulgare58.7461.9993.75336forward
CNT30595696Oryza barthiiOryza meridionalis10053.8197.03572forward
CNT30107357Oryza barthiiOryza longistaminata10076.5795.1572forward
CNT30100520Oryza barthiiOryza rufipogon10057.6693.36572forward
CNT30115854Oryza barthiiOryza nivara10075.8699.3572forward
CNT30550711Oryza barthiiOryza brachyantha90.0373.5791.26515forward

Expression of CNT30575387

Peptides detected in this lncRNA

>peptide 1 (61 aa)
MRRCWSGGMPSLSWILALTLSMVSELSTSRVMVLPVRVLTKICIPPRRRSTRWRVDSFWML*

Sequence

>CNT30575387
AAAACATCAACAGGAATGAGATGCAAATGAGCAAATTGAGCACATATTTAGGTTCAAATCCAACTTATTCATAAAGCATACTGCTGTCCCACAGGAAACT
GTTTCATAAAACTAACATATCATACGGACTCGATGGTCCATTAAACCAGACACAAGTAGACATCAGCACCACAAATACTTGACGAACAGAGGCTCGGGAC
GACCAGGCACATCGGCAGCTCCACCAAACTGGCTGGTTACTGACCACCACGGAGGCGGAGCACCAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCA
GCGAGGGTGCGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTGT
CGATGGTGTCCGAGCTCTCAACCTCCAGGGTGATGGTCTTGCCTGTGAGGGTCTTGACAAAGATCTGCATACCACCACGAAGGCGGAGCACAAGGTGGAG
GGTGGACTCCTTCTGGATGTTGTAGTCAGCAAGGGTCCTGCCATCCTCCAGCTGCTTGCCAGCAAAGATGAG