Detailed information on CNT30575379


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30673865Oryza barthiiSetaria viridis71.6916.593.85309reverse complement
CNT30708350Oryza barthiiGlycine max46.8725.2886.63202reverse complement
CNT30556102Oryza barthiiOryza glaberrima72.6251.1496.81313reverse complement
CNT30610339Oryza barthiiGossypium raimondii58.9376.2886.61254forward
CNT30646246Oryza barthiiCannabis sativa53.678.3186.58231forward
CNT30116753Oryza barthiiOryza nivara72.6278.0596.81313reverse complement

Expression of CNT30575379

Peptides detected in this lncRNA

>peptide 1 (29 aa)
IVPFKPFFHAFPGGLEKAAINRTSLILPS*

>peptide 2 (35 aa)
MWLFIYLLTQNGSRAGLKKDLRVSRVGPGGSLNAW*

Sequence

>CNT30575379
TATCGTACCATTCAAGCCTTTTTTTCATGCTTTTCCCGGCGGTCTGGAGAAAGCAGCAATCAATAGGACTTCCCTAATCCTCCCTTCCTGAAAGGAAGAA
CGTGAAATTCTTTTTCCTTTCCGCAGGGACCAGGAGGTTGGATCTAGCCATAAGAGGAATGCTTGGTATAAATAAGACACTTTTTGGTCTTTGACCCCCT
AAGTCACTACGAGCGCCCTCGATGAGTGCAATGGGATGTGGCTATTTATCTATCTCTTGACTCAAAATGGAAGCAGGGCAGGATTAAAAAAGGATCTTAG
AGTGTCTAGGGTTGGGCCAGGAGGGTCTCTTAACGCCTGGTAACTTTAAAAATATCATGAAAAGTTGGATAAAGTAGGAATATAATTTCGAAGTAACCAA
AGTTGGAAATACAATGTTGTTGCAATATGAT