Detailed information on CNT30575377


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691563Oryza barthiiOryza sativa10063.5699.54218forward
CNT30666747Oryza barthiiTriticum dicoccoides44.9523.2286.7398forward
CNT30689632Oryza barthiiTriticum urartu44.9520.2186.7398forward
CNT30340732Oryza barthiiEragrostis tef65.636.3987.41143forward
CNT30364640Oryza barthiiSorghum bicolor44.52582.4797forward
CNT30595766Oryza barthiiOryza meridionalis68.3552.4696.64149forward
CNT30100064Oryza barthiiOryza rufipogon65.65299.3143forward

Expression of CNT30575377

Peptides detected in this lncRNA

>peptide 1 (71 aa)
SCEVTMSRACAAVSERKQGPCRRQEQVREERSSGDHDVVRGAQRPDGLHRRRRDGLRGVDDLRALLRRVRDG

>peptide 2 (37 aa)
LARSPCPELVQRSVKESRDHAGGRSRYARNAAPATTT*

>peptide 3 (40 aa)
MPAAGAGTRGTQLRRPRRSPRSPATRWSPPSPTRWASRRR*

Sequence

>CNT30575377
TCTTGCGAGGTCACCATGTCCAGAGCTTGTGCAGCGGTCAGTGAAAGAAAGCAGGGACCATGCCGGCGGCAGGAGCAGGTACGCGAGGAACGCAGCTCCG
GCGACCACGACGTAGTCCGCGGAGCCCAGCGACCCGATGGTCTCCACCGTCGCCGACGCGATGGGCTTCGCGGCGTCGATGACCTTCGTGCCCTGCTGCG
CCGCGTCCGCGACGGTCT