Detailed information on CNT30575376


BLAST search results

BLAST vs Swiss-Prot:
sp|Q0JC10|DCAM_ORYSJ, E-value = 9e-154

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30189315Oryza barthiiSecale cereale22.3578.9389.14221forward
CNT30552730Oryza barthiiOryza glaberrima29.1266.67100288forward
CNT30459979Oryza barthiiSaccharum spontaneum39.1320.586.82387forward
CNT30364644Oryza barthiiSorghum bicolor24.8727.8689.84246forward
CNT30369690Oryza barthiiOryza glumipatula39.1338.7899.74387forward
CNT30100535Oryza barthiiOryza rufipogon60.8732.1499602forward
CNT30115991Oryza barthiiOryza nivara39.1338.97100387forward
CNT30603622Oryza barthiiOryza punctata37.3154.9997.02369forward

Expression of CNT30575376

Peptides detected in this lncRNA

>peptide 1 (52 aa)
MASRSLVVPQVLITILYGYTKRLDSERTYESKTSLESSDTMVHLARSRTESI*

>peptide 2 (40 aa)
MPLLPWLCRISNHVCVATRFETAEVAVQDCNLLREVLWQR*

>peptide 3 (37 aa)
MPEMRKKGSRTDDLPGHWEAASQRDVRKPKTRIQRSN*

>peptide 4 (58 aa)
MGTQRGSIQKGHTSRRPHWRAQTQWCTSPDQEQSQSEHVTVHATPCHWGQQRQAPRRK*

>peptide 5 (52 aa)
MMSEIPESLVISLAHVVCPSAEVLKKTEAFFLSSPVMHISRVTTGCSGCWVA*

Sequence

>CNT30575376
GCTGAAGCCATCCTCAGGAGTCACATGAATGGTTGAGAAAGCAGGGCCGTGGATGGCATTCATGGAGTAGCCGCAGGGCTCGAAATCGAAGTCGCAGACT
TCCATCTCTGGGATGATGTCAGAGATACCTGAGAGCTTGGTCATTTCCTTAGCACATGTTGTGTGTCCATCAGCAGAAGTCTTGAAGAAGACAGAAGCTT
TCTTCTTGTCCAGCCCAGTCATGCACATCTCAAGAGTGACCACAGGTTGCTCCGGGTGCTGGGTGGCATAGTAGACATGCCACTTCTGCCCTGGCTTTGC
AGGATCTCCAATCACGTATGCGTTGCCACCAGATTTGAGACCGCCGAAGTAGCGGTTCAGGACTGCAACCTCCTCAGAGAAGTTCTTTGGCAGAGATAGC
TCTTCAGCAAGCTCAAGAATCCTCGAAATGGCGAGCAGGAGCTTGGTAGTCCCACAGGTCTTGATCACAATCTTGTATGGGTACACAAAGAGGCTCGATT
CAGAAAGGACATACGAGTCGAAGACCTCATTGGAGAGCTCAGACACAATGGTGCACCTCGCCAGATCAAGAACAGAGTCAATCTGAGCACGTGACAGTGC
ACGCAACCCCCTGCCATTGGGGTCAGCAAAGACAGGCGCCTCGGAGAAAGTGATCTCGAGGCGTTTCTCATATCCCTCAAACCCGATCGCCGAGACCGGT
GGAGAGTCAGCAACTGACAGGACTGCCATTGTTTCGAAGGACGATGCCAGAGATGAGGAAGAAAGGAAGCAGGACTGATGACCTTCCCGGTCACTGGGAA
GCAGCTAGCCAGAGAGATGTAAGAAAGCCCAAAACGAGAATTCAGAGGAGTAACTAAACTACTAGGTCAAGGTAGCCAAGGGGGCTATCAAGAGGGCTTC
CTCGCGCACTGCAAGAGATGAAAACAATTTAACATCGTGAGCAACCAATCAACCGCCAATTAGAGAAACAAACTAGTGTTCAGTTGATT