Detailed information on CNT30575370


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30690984Oryza barthiiOryza sativa100.0787.2397.991489forward
CNT30189868Oryza barthiiSecale cereale7.5337.8483.04112forward
CNT30552577Oryza barthiiOryza glaberrima10079.8399.661488forward
CNT30441953Oryza barthiiAegilops tauschii4.7722.6888.7371forward
CNT30722320Oryza barthiiTriticum spelta9.4836.0685.11141forward
CNT30109881Oryza barthiiOryza longistaminata64.5870.0498.75961forward

Expression of CNT30575370

Peptides detected in this lncRNA

>peptide 1 (33 aa)
MTNNIIQKKKRSTCFEAVIDVKIHMCTGMERTD*

>peptide 2 (46 aa)
MLLDDTSSSGKPPDSELWDKLRRIRPVRLPREGDPFPCAAVHAILP*

>peptide 3 (46 aa)
MSRSTCVRAWKERINGGNISQGSLVDPEAFTFLAVVSIKALVLVNI*

>peptide 4 (47 aa)
MPFFHDMPRPPSLESPVRNWTSEFLSCSVQELVGEAKKSSSTRAWPR*

>peptide 5 (50 aa)
MEEIFPRALSLTLRRLLFLPLSASKLWFWLTSKLQMAIGLRWFWPLDCDS*

>peptide 6 (56 aa)
MLIEYAVSMAMIMSVKYKCRRAQVAIIKNQSCKELKISFRKMKAAARIDRTLFILF*

>peptide 7 (67 aa)
MAKVSHVKSVFVVLVGKMEGLHSFLHRLSIGANSLMKKEQDRKGTNSCYLFLCLIIQVIVTKFMSQD*

>peptide 8 (31 aa)
MLMNLDIYIYMNVGNTRKYYIMKRRECKFCL*

>peptide 9 (31 aa)
MVLAFGLRLLKSRLAAMLDQTAASLEGLRID*

Sequence

>CNT30575370
GTCACTTAGGCCTCCTGTCATGTAGTTAAAACTGACATCAAGGACCACGATGCTGCTGGATGACACCAGTTCCAGCGGTAAGCCACCGGACAGCGAGTTG
TGGGACAAGTTGAGGCGCATTAGACCTGTGAGATTGCCAAGGGAAGGTGATCCCTTCCCATGCGCAGCAGTCCATGCCATTCTTCCATGACATGCCCAGG
CCACCATCCCTCGAGAGCCCGGTGAGAAACTGGACAAGTGAGTTCCTCTCTTGCTCGGTGCAAGAACTGGTGGGAGAGGCCAAGAAGAGCAGCAGCACAA
GAGCATGGCCAAGGTAAGTCATGTGAAATCTGTTTTTGTGGTTCTTGTTGGAAAAATGGAGGGGCTGCATAGTTTTCTCCATAGGCTAAGCATCGGAGCC
AATAGTCTGATGAAGAAGGAACAGGATAGGAAGGGAACAAACAGCTGCTATCTCTTTCTTTGTTTGATCATTCAGGTCATAGTCACCAAATTTATGAGTC
AGGATTAAGATCTTATTGACTAATTGCAGCATCGCTTTCTAAGTTAACTATTCCCCACCCGCCACTACAGTTTATTGGAAAAACACATCTTTTTTTTTTG
GCGAAAAGAAGGGACCTCACAGATTTGCAAGATCGGATTGGTGAGGTACATGACAAACAACATCATTCAGAAAAAGAAAAGGAGCACATGTTTTGAAGCA
GTCATCGATGTCAAGATCCACATGTGTACGGGCATGGAAAGAACGGATTAATGGAGGAAATATTTCCCAGGGCTCTCTCGTTGACCCTGAGGCGTTTACT
TTTCTTGCCGTTGTCAGCATCAAAGCTTTGGTTTTGGTTAACATCTAAGTTGCAAATGGCAATTGGTTTACGATGGTTTTGGCCTTTGGACTGCGACTCT
TGAAGTCTAGATTAGCAGCAATGCTGGACCAGACAGCAGCATCATTAGAGGGGCTGAGAATCGATTAGTCAGGTTAATGGCAGTGTTCATGTGATCATTA
GCTGGTATTTCAGTAACCAGCAAAAAGATTGCTTGCATTTGTCTTTTCCTTTGGCAGATAAGGAGTACTTCTGATGTTGATAGAATATGCTGTTTCTATG
GCTATGATAATGTCTGTCAAATACAAATGCAGAAGGGCACAAGTGGCTATCATTAAAAATCAAAGTTGCAAGGAGTTAAAAATAAGTTTCAGGAAAATGA
AGGCGGCAGCAAGAATTGACCGTACTCTTTTCATTTTGTTCTAGTACTTCATCCGTTTTATAATGTAAAGCTTTCTAACATTAACCACATTCGTATAGAT
GTTAATGAATCTAGACATATACATTTATATGAATGTGGGGAATACTAGAAAGTATTACATTATGAAACGGAGGGAGTGTAAATTTTGTCTGTAACTATCA
GTATGTTCTTTTGCCGAGTCGGCCGAACGAGGCAGACCAAATTTCATTATGGTAAAGGAGAATGTAAAGAACTATAAGCATATTCCAG