Detailed information on CNT30575356


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30364724Oryza barthiiSorghum bicolor39.9220.7287.38103forward
CNT30100235Oryza barthiiOryza rufipogon98.0610098.42253forward
CNT30115996Oryza barthiiOryza nivara96.5184.9893.98249forward

Expression of CNT30575356

Peptides detected in this lncRNA

>peptide 1 (85 aa)
GVHAGAEEDAEDADDHGASLVGVGEVEDEGRDGGDEGEEEGDVGELDGHAGAVDGDDQHAVRVHRGEAVQHPHHAIEQRGHVRHRR

>peptide 2 (42 aa)
AYMPVPKRTQRMPTIMERRSWVWARLRTRAATAATKARKRAM*

>peptide 3 (38 aa)
MAMPVPLMVMTSMLCGCTAGRPYSTHIMQLSSVATYGTA

Sequence

>CNT30575356
GGCGTACATGCCGGTGCCGAAGAGGACGCAGAGGATGCCGACGATCATGGAGCGTCGCTCGTGGGTGTGGGCGAGGTTGAGGACGAGGGCCGCGACGGCG
GCGACGAAGGCGAGGAAGAGGGCGATGTAGGTGAGCTCGATGGCCATGCCGGTGCCGTTGATGGTGATGACCAGCATGCTGTGCGGGTGCACCGCGGGGA
GGCCGTACAGCACCCACATCATGCAATTGAGCAGCGTGGCCACGTACGGCACCGCCGA