Detailed information on CNT30575334


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691584Oryza barthiiOryza sativa90.8929.9599.74389forward
CNT30461578Oryza barthiiSaccharum spontaneum15.1921.2487.6965forward
CNT30100143Oryza barthiiOryza rufipogon10040.1199.77428forward
CNT30116099Oryza barthiiOryza nivara10098.1799.53428forward
CNT30603698Oryza barthiiOryza punctata97.933.3195.7419forward

Expression of CNT30575334

Peptides detected in this lncRNA

>peptide 1 (55 aa)
MLPKNILNPYSFSRLHNTSAYKNTPSPPNISSKLELGGLRVICVGGLLAVGRLCW*

>peptide 2 (67 aa)
MGSQSHTVDQNARLLLQQLYQQRRGFSRRVHKCFRRTYSIPIAFQDSITQALTKTHRAPLTFPANWN*

>peptide 3 (51 aa)
MVQNLVLRTTWGLKVIQSTKTLGSCFNNCISSGGVFPEGYTNASEEHTQSL*

Sequence

>CNT30575334
GACATTAATTAATAATACTAGTATTTAGCACAAATATTCCAGCAATGTGAAAAATCTAATGGTACAAAACTTAGTCTTACGGACTACATGGGGTCTCAAA
GTCATACAGTCGACCAAAACGCTAGGCTCCTGCTTCAACAATTGTATCAGCAGCGGCGGGGTTTTTCCCGAAGGGTACACAAATGCTTCCGAAGAACATA
CTCAATCCCTATAGCTTTTCAAGACTCCATAACACAAGCGCTTACAAAAACACACCGAGCCCCCCTAACATTTCCAGCAAATTGGAACTAGGCGGGTTAC
GCGTTATTTGCGTAGGGGGACTCCTCGCGGTTGGCCGGCTGTGCTGGTGATCGGCTGTAGCTTCGTGCACGAGCTGGTGGTGGCGACCTGCTGTAGCTGC
GCCTCTTTGGAGAACGATCCCGTGGGCT