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Detailed information on CNT30575322


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30107388Oryza barthiiOryza longistaminata100.2193.3199.05949forward
CNT30100370Oryza barthiiOryza rufipogon10089.5199.58947forward

Expression of CNT30575322

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

>peptide 2 (54 aa)
MNSSTYEHLARLRRLYIVYWLPLLNVSLITHDMLAWKGSFELIMRPVTILSSEL*

Sequence

>CNT30575322
CGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCG
CCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTG
CAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCA
AGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAAC
TCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGGCAATTGCAAATGAACTCATCAACATATG
AACATCTAGCAAGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGCTGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTT
TGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTCTAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTT
GTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAATTTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCT
GTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTTTTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGGAAGGAAA
AAGATGTATGACTGTTCTCAAGCAAATGAAAAATTCCAGCTTTTATG