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Detailed information on CNT30575314


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002760, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691044Oryza barthiiOryza sativa33.4341.6397.63338forward
CNT30555251Oryza barthiiOryza glaberrima9.6924.0896.9498forward
CNT30596989Oryza barthiiOryza meridionalis10.6826.5493.52108forward
CNT30369658Oryza barthiiOryza glumipatula21.6610097.72219forward
CNT30109832Oryza barthiiOryza longistaminata30.0792.6895.72304forward
CNT30115936Oryza barthiiOryza nivara23.1530.51100234forward

Expression of CNT30575314

Peptides detected in this lncRNA

>peptide 1 (35 aa)
MSRIYFDSLGSPTKKMIFLYRDPFRLQTDHNWSRL*

>peptide 2 (49 aa)
MQYRAQPISHRVSLFASSMPNVAHMNTSAYLHTHLHVSSPSIRIKEFYG*

>peptide 3 (49 aa)
MAFRYRLFLIFVTVEIVMLIVRSTASDFRSGSSGSSPICNACPCCPCKC*

Sequence

>CNT30575314
GAAGATTAAGGCTCTGTGTTTAGCTATCGGTGAAAGCGGAGAGATATTCATTTCTGCCCCTATTTGATCATGGCTTTTAGATACCGCCTGTTTCTTATAT
TCGTGACGGTGGAGATCGTTATGCTTATTGTCCGAAGCACAGCATCAGATTTTCGGTCAGGTTCATCAGGGTCAAGTCCGATATGCAACGCATGTCCATG
CTGCCCATGCAAATGCTGATCATTACCATGTCGTCGTTGTTCTCTTCGTAACCGCATTGAGCAAATTCAATTGTTTTGATGTTTTGTATTTCCTCATCAG
GTTCTATTTTGTAATATACCAATTCAGAAGCACATACATGTAGTACAATTCAACACATCAATCAATGGCTTATCATCAGCTGATAACAACCAAAACCGTA
CCCTTTTTTTCTCTTTTTTTTTAAATTTTTTTAGGCTCCTCAAGTATCCCTTCTTTCTATAAAGGTAAGGCCAAAAGCTTAAACCTTGTGCTTTCACGTC
ATCATCAAATTGTGAACCGTTGGATGAATGTATTAGATTGCTTCTCAGACGTTGGATGGAATGCAGTATAGAGCCCAACCCATCAGTCACCGAGTGAGTC
TCTTCGCCTCCTCAATGCCAAATGTAGCCCACATGAACACATCGGCCTATCTCCACACACATCTACATGTATCCAGTCCGTCAATCCGTATAAAAGAGTT
TTATGGCTGAACGCTCCTTCAGTTGATATGTGCTACCTAAATTATCTATAATTGTTTGATAGGGCTGCTAAAAAAAATTCTCCAAAGAAAGCTATTTGTT
TCTTCTATTTCTTCTTGAGATTATATCTCTTATCTAACAAATTGATGTTAACCAAGTCCCACAGCAACGCGCGGGGGCATCCTCTAGTAAGTTCATGAGT
AGGATCTATTTTGATTCTCTAGGTAGTCCCACTAAAAAAATGATTTTCCTGTACAGGGACCCATTTAGATTGCAGACGGATCATAATTGGTCGCGTCTGT
AAAATCGTCCT