CANTATAdb - search

Detailed information on CNT30575292

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30100218	Oryza barthii	Oryza rufipogon	78.16	75	100	408	forward

Expression of CNT30575292

Peptides detected in this lncRNA

>peptide 1 (32 aa)
SVSPSTVLLISSGSSSFTCTSSVGSLASKLAS*

>peptide 2 (42 aa)
MFFWKMVSDSVASVSLISWTDSISKICGSLSVRLSSVACSSH*

>peptide 3 (35 aa)
MCLMGSFSCFTIYSVTYFFWFKILFLHIIDWLTCY*

>peptide 4 (38 aa)
LFHHPQCYLFLLVQAPLLAHHQLAHLLVNWLLELSPQQ*

Sequence

>CNT30575292
TTCTGTTTCACCATCCACAGTGTTACTTATTTCTTCTGGTTCAAGCTCCTTTACTTGCACATCATCAGTTGGCTCACTTGCTAGTAAATTGGCTTCTTGA
GCTGTCTCCTCAACAATAGCCCCACTGCTTTGATCAGGTTCTTTTGCTGTAGCATTTTCTTCTGGGACAGACTCCTCGGAAGTAGGAACAATGTTTTTCT
GGAAAATGGTTTCAGATTCAGTAGCTTCAGTGTCTTTAATATCCTGGACTGATTCCATTTCCAAAATTTGTGGTTCACTTTCTGTTAGACTTTCCTCTGT
TGCTTGCTCCTCACATTGAGTAATATTACTTTGGTGGGCAATTGCTTGATCTTCAGAGGCTTCAACACTGCTCTCTACCTCACCTGTCCAATTATCTTCA
ACAGCAGCATGTGTTTGATGGGAAGCTTCTCCTGTTTCACCATCTACAGTGTTACTTATTTCTTCTGGTTCAAGATCCTTTTCTTGCACATCATCGATTG
GCTCACCTGCTACTAAATCGGC