CANTATAdb - search

Detailed information on CNT30575273

BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT002830, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)

Target	Query species	Target species	Query coverage (%)	Target coverage (%)	Identity	Alignment length (nt)	Orientation
CNT30100095	Oryza barthii	Oryza rufipogon	99.07	80.66	100	534	forward

Expression of CNT30575273

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MGLTIVALHLRVHIRSAAQFVLLLLSAILINSSGLGRVMVIRLAN*

>peptide 2 (45 aa)
TTATIFLNLFFLHFPGIIIPNTIWMASKVHYGRYRKARKSKEKLQ*

>peptide 3 (47 aa)
NNSNDIFKSFFSSFSRYHNPQHHLDGLQGTLRQVQKGKKKQGKITVE*

Sequence

>CNT30575273
AACAACAGCAACGATATTTTTAAATCTTTTTTTTCTTCATTTTCCAGGTATCATAATCCCCAACACCATCTGGATGGCCTCCAAGGTACATTACGGCAGG
TACAGAAAGGCAAGAAAAAGCAAGGAAAAATTACAGTAGAGTAGATCGAAAAGCACGGCATGATGATGATATTGAAAAAAGAAAAGGCAGGGCTAGCTGT
TTTTAACAAGAGCAGCCAGGCCCTCCTCCTGTAAATAAGACAGTAAATTACCCCCAATGGGACTGACAATAGTAGCACTGCACTTGAGAGTACATATAAG
AAGTGCAGCTCAATTTGTTCTTCTTTTGCTCTCTGCCATACTAATTAACAGCAGCGGATTAGGCAGGGTGATGGTGATTAGATTAGCTAATTAATTTGAG
ACATGTAGTAATATCCCTTTGGGACGGCTTAGCTAAAGGTAGTACTCCACTTTGCTAGTAAGTCATGAAGGCCTCATCGGTGGCCATGCCTCCTGAGTGA
CTGGCTAGCTGGTGAAGTAAAGAGGGCGGCGTGAGCTAG