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Detailed information on CNT30575255


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30691342Oryza barthiiOryza sativa10079.1699.58942forward
CNT30552482Oryza barthiiOryza glaberrima10093.6499.89942forward
CNT30369626Oryza barthiiOryza glumipatula10077.2199.68942forward

Expression of CNT30575255

Peptides detected in this lncRNA

>peptide 1 (45 aa)
MPFSASSRRPLPSTVPVRRARGFSDSCKGTVTSLWQQLHILQENL*

Sequence

>CNT30575255
CGCAGCCGCACCGATCTCGTGAATTCCCCTCCCTGACCACTCTCCCGGCCCCGGCCCCGGCCACCACCTAAATCGCAATGCCTTTCTCCGCTAGCTCCCG
CCGTCCCCTCCCCTCGACGGTGCCGGTGCGGCGCGCGCGTGGTTTCTCAGATTCATGCAAGGGGACGGTGACAAGCTTGTGGCAGCAACTGCACATCTTG
CAAGAAAATCTTTAGGGTTTTTCAGACCATACCGATGATTTTCTTGCAAGTTGTGCAGTTGTTGTCTCAAGCTTGCTGCCTCCCTTTGCCAAAACTATCA
AGTGAGAAAGCAGGGTAGAGTTATTCAATTACAGGCACACAAGACAAAATTAAAGTAATAAACATGTCTGACCAACAAACACAATGATTAATAACAAAAC
TCTTGTGGCATGAGATAATATTGAAGCATGATGCTTACAACAGTTATAATATGAAAACTAGATGGAGGCAGTGCCACCAGGCAATTGCAAATGAACTCAT
CAACATATGAACATCTAGCAAGGTGAGTAAAGTCTGGTAAGGTGCTAGATGAGTAAAGTCTGATTACGTCGTCTCTACATTGTGTATTGGCTTCCACTGC
TGAATGTTTCTCTTATTACCCATGACATGCTTGCTTGGAAGGGCAGTTTTGAGTTGATCATGAGGCCAGTCACAATTCTTAGTAGTGAATTATGAATTTC
TAAATGCATTATGTTAGTTTCATGGCTTGATCCTTGGTTTCTTTGTTTTGTAGGTTTGCAGGAATTTCTCTAGGAATGCCCAGTGAGTGATCCTGTAAAT
TTTGGAGTTGATTGTTCATCAGAATAGCACTATAATTTTCCTGTCACCTGTGCTTTGGTAGCGGAACGTTCATTGTCCCATGCTACTCAGCTTTGTACTT
TTGTAAATCAAATGAGACTGAATAATATATGTTTACTTTTGG