Detailed information on CNT30575248


BLAST search results

BLAST vs Swiss-Prot:
sp|Q9C7S5|PSYR1_ARATH, E-value = 3e-08

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552861Oryza barthiiOryza glaberrima10051.07100309forward
CNT3066951Oryza barthiiLeersia perrieri33.662.5583.65104forward
CNT30722486Oryza barthiiTriticum spelta32.6920.8783.17101forward
CNT30150273Oryza barthiiBrachypodium distachyon36.8950.2282.46114forward
CNT30603683Oryza barthiiOryza punctata44.6631.7282.61138forward

Expression of CNT30575248

Peptides detected in this lncRNA

>peptide 1 (97 aa)
RNAPVTCTGRRRAWPSRSSRGPAHMSGAGWCDTPVSAFRNATLSSRARVRPPSRRSGSILSRLATISIIVGLIKGLPSTHLQAVSRTFSICSSHPVP*

>peptide 2 (31 aa)
AKCSSDLYRAAASVAIEELAGTGTYVWRRMV*

>peptide 3 (29 aa)
MPRSLHARVSAHLREGQGLYCPDWLLFPS*

Sequence

>CNT30575248
GCGAAATGCTCCAGTGACTTGTACCGGGCGGCGGCGAGCGTGGCCATCGAGGAGCTCGCGGGGACCGGCACATATGTCTGGCGCCGGATGGTGTGACACC
CCAGTGAGTGCGTTCCGCAATGCCACGCTCTCTTCACGCGCGCGTGTCCGCCCACCTTCGAGAAGGTCAGGGTCTATACTGTCCAGACTGGCTACTATTT
CCATCATAGTTGGCCTCATCAAAGGATTACCATCGACGCACTTGCAAGCAGTTTCAAGGACCTTTAGCATTTGCTCTTCACACCCTGTGCCTTGAAGTGT
TGAATCCAG