« Back to Oryza barthii search


Detailed information on CNT30575239


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE:
NONORUT001725, E-value = 0.0

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30553847Oryza barthiiOryza glaberrima23.643.3499.57231forward
CNT30371140Oryza barthiiOryza glumipatula23.647.5397.4231forward

Expression of CNT30575239

Peptides detected in this lncRNA

>peptide 1 (33 aa)
LILCVDTSIMLTSLTSLIRLVYMTCLLSYVFRL*

Sequence

>CNT30575239
TTAATTCTTTGTGTTGATACTTCGATTATGTTGACCTCTCTAACCTCGCTAATACGGTTAGTGTATATGACATGTTTACTCTCTTATGTTTTTAGATTAT
AATTCACTTATGTCTATCTGTAATACCCCGAGTTTTAAATTAATATATCTCGCGGAATATTAGAGCAAACGCGCAAAAGTTCAACTTTTAAACCATTGTT
CGTATAGGCGATCGGGAACCGTGGATGCGTAGAGCTCGCCGAGTAGTGCAAAATAGACTATAAATTTATAGTAATCGGAGTCCGAACAAAGTCCCGAGGA
TTGAATAGATGTGAGCCGTTAGATCTTATTTAGTCTCTTTATATAACCAACCAAAAAAAAACAAAGAAAAAAAAAAGAAACAGGAGCGATTCTCCTGTAG
CCCTAGCCGCCGCACCTCCTGCGCTCTGCCGCCGCCGCTGCTGTTCCTCTCTTCGCCGGCGCCGCCGCTGGTGCAGCCGTCGCCGGTCGCCACAGCCGTC
GTCGTCCGCAGTCGGTCGTTGATGAGCTACTGTTGTTTCTGTTAATTTCCCTGCTGCTGCCGAACCCTGCTGTTGCCGATCTGATCTCTTCCTTGCTGGT
GGTGCACGGCTTGCTGTTGCTGCCGATATTCGTTTCTGCTGCTGCTGCTGTTGGCCTGCAACGAACAGGAAGGAGGGAGAGAAGGCAGAGAAGAACAGGA
AGGAAGGAAAGAAGGGGAAATTTGATAGAAGAAGGGAAATTTGGGGAATTTGGTACCTAATGACATCGATCGGCATGGGGCGGGAGTAGCACCCTTGGAC
TACACATTATTATTGCACACAATTGAAATTAGTTTTAGACTATAATTTTTGCTCAGCATAAGTTTTGCATAGAACTTGTAAAGGTCATTTAAGGTTCTGA
TCCTTATTTTTCACGTGGGATTTGTGGAGCTAGGATGGTTTGGATTGTGTGGTTTATATCGGTATTGACCTTTCTTATA