Detailed information on CNT30575237


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30670550Oryza barthiiSetaria viridis32.1826.6787.14140forward
CNT30519875Oryza barthiiSetaria italica32.1821.1887.14140forward
CNT30395922Oryza barthiiTriticum turgidum11.9525.1292.3152forward
CNT30139784Oryza barthiiLolium perenne31.4925.3289.05137forward
CNT30364692Oryza barthiiSorghum bicolor25.5218.8887.39111forward
CNT30100580Oryza barthiiOryza rufipogon57.2455.2199.6249forward
CNT30584006Oryza barthiiEchinochloa crusgalli31.4927.1385.4137forward
CNT30495845Oryza barthiiDigitaria exilis26.6719.0287.07116forward
CNT30556352Oryza barthiiPanicum hallii30.1118.2287.79131forward
CNT30112638Oryza barthiiFicus carica22.5314.3582.6598forward

Expression of CNT30575237

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MLVEDLIHRLNIDINQITCVCDIAFWGQIQ

>peptide 2 (57 aa)
CNSARRGSHSLTPQRSSTDCSRLYLFCLSISLFRSTCLKPISSSSFSSFSSVRLSMP*

>peptide 3 (61 aa)
LQLRQERVPLADATEIIDRLLQVVLVLPEYLLVQIDLPKTHFLKFLQQFLFCEIVNAMMIR*

Sequence

>CNT30575237
CTGCAACTCCGCCAGGAGAGGGTCCCACTCGCTGACGCCACAGAGATCATCGACAGACTGCTCCAGGTTGTACTTGTTCTGCCTGAGTATCTCCTTGTTC
AGATCGACCTGCCTAAAACCCATTTCCTCAAGTTCCTTCAGCAGTTTCTCTTCTGTGAGATTGTCAATGCCATGATGATCAGATGATGATGCACCAACAG
ACGCAGGTGCATTACCAGCAGGCACATTAACAGTTGGAGGCACAGGAGTCACAGCAGGTTCAGGCGCAGGCTCATCAAAGACAGGCACAAAAGCAGCAGC
AGTTGAACTGGAGGGAACATCAACATCAATGATGGGGTGAAGAGATGTTGGTTGAAGACTTGATCCACAGGCTCAATATTGACATCAATCAAATTACTTG
TGTTTGTGATATTGCTTTCTGGGGGCAAATTCAAG