Detailed information on CNT30575223


BLAST search results

BLAST vs Swiss-Prot: nothing found

BLAST vs NONCODE: nothing found

Results of reciprocal BLAST search (potential orthologs)
TargetQuery speciesTarget speciesQuery coverage (%)Target coverage (%)IdentityAlignment length (nt)Orientation
CNT30552683Oryza barthiiOryza glaberrima68.44100100527forward
CNT30603710Oryza barthiiOryza punctata78.57102.285.12605forward

Expression of CNT30575223

Peptides detected in this lncRNA

>peptide 1 (29 aa)
MFARHRVLKVFVGYLSSMGWQVFLSVLFS*

>peptide 2 (87 aa)
KHLYSDPSIPAVLPRVLMPGPSRGAQPLAGLTPSPWCGWGRVPPQAPIGPKNGGGASTPSTSVIKSKLISLTSGGWYSVGSWILHLL*

>peptide 3 (91 aa)
MDFASSVIKCWSPSTTFSPNARNLDRFGGGFFNCLNLQLCLPSNRPDFDQWWMEARCKVKTQNPQGFDTLVILIAWGIWKEQYTNAREGAG*

>peptide 4 (39 aa)
MPGILTGLVEDFSTASTCNCVSLRTGQILINGGWRLDAK*

>peptide 5 (56 aa)
MQSKDTESTGFRHACDLNRLGNLEGTVYERERRSWIALIVDIAEEVRQRMLAETKV*

Sequence

>CNT30575223
AAAACACTTGTATTCTGATCCATCCATTCCTGCAGTTTTGCCCCGTGTCCTGATGCCCGGGCCTTCACGTGGAGCACAGCCGTTGGCTGGGCTCACTCCA
TCTCCATGGTGCGGGTGGGGGAGGGTGCCGCCGCAAGCTCCAATCGGACCGAAAAATGGAGGAGGTGCTAGTACCCCCTCCACTTCTGTAATCAAGTCAA
AGTTGATTTCTTTAACTTCCGGAGGCTGGTACAGCGTGGGATCATGGATTTTGCATCTTCTGTGATCAAGTGCTGGAGTCCATCGACCACGTTCTCTCCC
AATGCCCGGAATCTTGACAGGTTTGGTGGAGGATTTTTCAACTGCCTCAACCTGCAATTGTGTCTCCCTTCGAACCGGCCAGATTTTGATCAATGGTGGA
TGGAGGCTAGATGCAAAGTAAAGACACAGAATCCACAGGGTTTCGACACGCTTGTGATCTTAATCGCTTGGGGAATTTGGAAGGAACAGTATACGAACGC
GAGAGAAGGAGCTGGATAGCCCTAATCGTGGACATCGCGGAGGAAGTGCGCCAACGGATGCTAGCCGAGACTAAGGTATAGTGCCGCTGGTTCTTTAGGA
GTGGTTGTTCGCTCTGTCACACAATGTTTGCGAGACATCGCGTTTTAAAGGTTTTCGTTGGGTACTTGTCTTCCATGGGGTGGCAAGTTTTTTTATCCGT
ACTCTTCTCTTAATACAACAATACATGAACCATTTTACGTATTTTAAAAATAGCATATATAAAACTACCG